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LINC00261 long intergenic non-protein coding RNA 261 [ Homo sapiens (human) ]

Gene ID: 140828, updated on 23-Nov-2021

Summary

Official Symbol
LINC00261provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 261provided by HGNC
Primary source
HGNC:HGNC:16189
See related
Ensembl:ENSG00000259974 MIM:618518
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ALIEN; DEANR1; FALCOR; HCCDR1; C20orf56; NCRNA00261; TCONS_00027846; onco-lncRNA-17
Summary
This gene produces a long non-coding RNA that acts as a negative regulator of cell growth. This transcript may promote differentiation and apoptosis. [provided by RefSeq, Dec 2017]
Expression
Biased expression in liver (RPKM 46.4), stomach (RPKM 29.7) and 6 other tissues See more
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Genomic context

See LINC00261 in Genome Data Viewer
Location:
20p11.21
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (22560553..22578642, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22541191..22559280, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372563 Neighboring gene uncharacterized LOC105372564 Neighboring gene forkhead box A2 Neighboring gene lncRNA neighboring enhancer of FOXA2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance.
GeneReviews: Not available

General gene information

Markers

Other Names

  • Foxa2-adjacent long noncoding RNA
  • definitive endoderm-associated long non-coding RNA 1
  • hepatocellular carcinoma down-regulated RNA 1

Clone Names

  • bA216C10.1, dJ788L20.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001558.3 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL121722, AV648632, BG655894
    Related
    ENST00000564492.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    22560553..22578642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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