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ANKRD60 ankyrin repeat domain 60 [ Homo sapiens (human) ]

Gene ID: 140731, updated on 13-May-2022

Summary

Official Symbol
ANKRD60provided by HGNC
Official Full Name
ankyrin repeat domain 60provided by HGNC
Primary source
HGNC:HGNC:16217
See related
Ensembl:ENSG00000124227 AllianceGenome:HGNC:16217
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf86; bA196N14.3
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See ANKRD60 in Genome Data Viewer
Location:
20q13.32
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (58216126..58228653, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (59997151..60009656, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (56791182..56803709, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985434 Neighboring gene chromosome 20 open reading frame 85 Neighboring gene uncharacterized LOC105372694 Neighboring gene protein phosphatase 4 regulatory subunit 1 like (pseudogene) Neighboring gene RAB22A, member RAS oncogene family

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Homology

General protein information

Preferred Names
ankyrin repeat domain-containing protein 60

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304369.2NP_001291298.1  ankyrin repeat domain-containing protein 60

    See identical proteins and their annotated locations for NP_001291298.1

    Status: VALIDATED

    Source sequence(s)
    AL354776
    Consensus CDS
    CCDS77596.1
    UniProtKB/Swiss-Prot
    Q9BZ19
    Related
    ENSP00000396747.1, ENST00000457363.2
    Conserved Domains (4) summary
    cd01769
    Location:103163
    UBL; Ubiquitin-like domain of UBL
    cd00204
    Location:171298
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13857
    Location:239293
    Ank_5; Ankyrin repeats (many copies)
    sd00045
    Location:223250
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    58216126..58228653 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047439903.1XP_047295859.1  ankyrin repeat domain-containing protein 60 isoform X2

  2. XM_047439902.1XP_047295858.1  ankyrin repeat domain-containing protein 60 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    59997151..60009656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_080674.1: Suppressed sequence

    Description
    NM_080674.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.