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SAMD10 sterile alpha motif domain containing 10 [ Homo sapiens (human) ]

Gene ID: 140700, updated on 22-Apr-2017
Official Symbol
SAMD10provided by HGNC
Official Full Name
sterile alpha motif domain containing 10provided by HGNC
Primary source
HGNC:HGNC:16129
See related
Ensembl:ENSG00000130590 Vega:OTTHUMG00000033011
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ591C20; C20orf136; dJ591C20.7
Orthologs
Location:
20q13.33
Exon count:
7
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) 20 NC_000020.11 (63974113..63980788, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (62605466..62611182, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uridine-cytidine kinase 1 like 1 Neighboring gene microRNA 647 Neighboring gene UCKL1 antisense RNA 1 Neighboring gene zinc finger protein 512B Neighboring gene pre-mRNA processing factor 6 Neighboring gene chromosome 20 open reading frame 204

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

NHGRI GWAS Catalog

Description
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
NHGRI GWA Catalog

Markers

Homology

Preferred Names
sterile alpha motif domain-containing protein 10
Names
D930033N23Rik
SAM domain-containing protein 10

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080621.4NP_542188.1  sterile alpha motif domain-containing protein 10

    See identical proteins and their annotated locations for NP_542188.1

    Status: VALIDATED

    Source sequence(s)
    AI866764, BC067362, BM839907
    Consensus CDS
    CCDS13549.1
    UniProtKB/Swiss-Prot
    Q9BYL1
    Related
    ENSP00000358902.3, OTTHUMP00000031619, ENST00000369886.7, OTTHUMT00000080255
    Conserved Domains (2) summary
    cd09510
    Location:113187
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
    smart00454
    Location:115182
    SAM; Sterile alpha motif

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p7 Primary Assembly

    Range
    63974113..63980788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017027671.1XP_016883160.1  sterile alpha motif domain-containing protein 10 isoform X4

    UniProtKB/Swiss-Prot
    Q9BYL1
    Conserved Domains (2) summary
    cd09510
    Location:113187
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
    smart00454
    Location:115182
    SAM; Sterile alpha motif
  2. XM_006723705.3XP_006723768.1  sterile alpha motif domain-containing protein 10 isoform X3

    Conserved Domains (2) summary
    cd09510
    Location:119193
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
    smart00454
    Location:121188
    SAM; Sterile alpha motif
  3. XM_011528565.2XP_011526867.1  sterile alpha motif domain-containing protein 10 isoform X1

    Conserved Domains (2) summary
    cd09510
    Location:317391
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
    smart00454
    Location:319386
    SAM; Sterile alpha motif
  4. XM_005260199.4XP_005260256.1  sterile alpha motif domain-containing protein 10 isoform X2

    Conserved Domains (2) summary
    cd09510
    Location:152226
    SAM_aveugle-like; SAM domain of aveugle-like subfamily
    smart00454
    Location:154221
    SAM; Sterile alpha motif

Alternate CHM1_1.1

Genomic

  1. NC_018931.2 Alternate CHM1_1.1

    Range
    62506542..62512053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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