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Rps3 ribosomal protein S3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 140654, updated on 3-Jun-2018
Official Symbol
Rps3provided by RGD
Official Full Name
ribosomal protein S3provided by RGD
Primary source
RGD:619888
See related
Ensembl:ENSRNOG00000017418
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
ribosomal protein subunit [RGD, Feb 2006]
Expression
Biased expression in Spleen (RPKM 5030.6), Thymus (RPKM 4167.5) and 9 other tissues See more
Orthologs
See Rps3 in Genome Data Viewer
Location:
1q32
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (164435868..164441167, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (170637728..170643027, complement)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene glycerophosphodiester phosphodiesterase domain containing 5 Neighboring gene kelch-like family member 35 Neighboring gene endogenous retrovirus group K member 9 Pol protein-like Neighboring gene peptidyl-prolyl cis-trans isomerase D-like Neighboring gene arrestin, beta 1

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
NOT DNA N-glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
DNA binding ISO
Inferred from Sequence Orthology
more info
 
DNA-(apurinic or apyrimidinic site) endonuclease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-(apurinic or apyrimidinic site) endonuclease activity ISO
Inferred from Sequence Orthology
more info
 
Hsp70 protein binding ISO
Inferred from Sequence Orthology
more info
 
Hsp90 protein binding ISO
Inferred from Sequence Orthology
more info
 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to RNA polymerase II regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
class I DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
Inferred from Electronic Annotation
more info
 
damaged DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
damaged DNA binding ISO
Inferred from Sequence Orthology
more info
 
endodeoxyribonuclease activity ISO
Inferred from Sequence Orthology
more info
 
enzyme binding ISO
Inferred from Sequence Orthology
more info
 
kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
kinase binding ISO
Inferred from Sequence Orthology
more info
 
mRNA binding ISO
Inferred from Sequence Orthology
more info
 
microtubule binding ISO
Inferred from Sequence Orthology
more info
 
oxidized purine DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxidized purine DNA binding ISO
Inferred from Sequence Orthology
more info
 
oxidized purine nucleobase lesion DNA N-glycosylase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oxidized pyrimidine DNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein kinase A binding ISO
Inferred from Sequence Orthology
more info
 
protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
small ribosomal subunit rRNA binding ISO
Inferred from Sequence Orthology
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IC
Inferred by Curator
more info
PubMed 
supercoiled DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
tubulin binding ISO
Inferred from Sequence Orthology
more info
 
ubiquitin-like protein conjugating enzyme binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
DNA damage response, detection of DNA damage ISO
Inferred from Sequence Orthology
more info
 
DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
cellular response to DNA damage stimulus IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to DNA damage stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to hydrogen peroxide ISO
Inferred from Sequence Orthology
more info
 
cellular response to nerve growth factor stimulus IDA
Inferred from Direct Assay
more info
PubMed 
cellular response to tumor necrosis factor ISO
Inferred from Sequence Orthology
more info
 
chromosome segregation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
 
negative regulation of protein ubiquitination ISO
Inferred from Sequence Orthology
more info
 
negative regulation of translation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of DNA N-glycosylase activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of DNA repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of DNA repair ISO
Inferred from Sequence Orthology
more info
 
positive regulation of JUN kinase activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
positive regulation of NF-kappaB transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of NIK/NF-kappaB signaling ISO
Inferred from Sequence Orthology
more info
 
positive regulation of T cell receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
positive regulation of activated T cell proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of apoptotic signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of apoptotic signaling pathway ISO
Inferred from Sequence Orthology
more info
 
positive regulation of base-excision repair ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis ISO
Inferred from Sequence Orthology
more info
 
positive regulation of endodeoxyribonuclease activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
positive regulation of interleukin-2 production ISO
Inferred from Sequence Orthology
more info
 
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage ISO
Inferred from Sequence Orthology
more info
 
positive regulation of microtubule polymerization ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein complex assembly IEA
Inferred from Electronic Annotation
more info
 
positive regulation of protein complex assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
regulation of translation IEA
Inferred from Electronic Annotation
more info
 
response to TNF agonist ISO
Inferred from Sequence Orthology
more info
 
response to oxidative stress ISO
Inferred from Sequence Orthology
more info
 
spindle assembly ISO
Inferred from Sequence Orthology
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
translation IC
Inferred by Curator
more info
PubMed 
Component Evidence Code Pubs
NF-kappaB complex ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosolic small ribosomal subunit IDA
Inferred from Direct Assay
more info
PubMed 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
dendrite IDA
Inferred from Direct Assay
more info
PubMed 
endomembrane system IDA
Inferred from Direct Assay
more info
PubMed 
endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
 
mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
mitochondrial matrix ISO
Inferred from Sequence Orthology
more info
 
mitotic spindle ISO
Inferred from Sequence Orthology
more info
 
nucleolus IEA
Inferred from Electronic Annotation
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
polysome ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex ISO
Inferred from Sequence Orthology
more info
 
ribonucleoprotein complex ISS
Inferred from Sequence or Structural Similarity
more info
 
ribosome ISO
Inferred from Sequence Orthology
more info
 
ruffle membrane ISO
Inferred from Sequence Orthology
more info
 
spindle IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
40S ribosomal protein S3
NP_001009239.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001009239.1NP_001009239.1  40S ribosomal protein S3

    See identical proteins and their annotated locations for NP_001009239.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088450
    UniProtKB/Swiss-Prot
    P62909
    Related
    ENSRNOP00000023935.3, ENSRNOT00000023935.5
    Conserved Domains (1) summary
    PTZ00084
    Location:4216
    PTZ00084; 40S ribosomal protein S3; Provisional

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    164435868..164441167 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    151861094..151866394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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