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Sox9 SRY-box transcription factor 9 [ Rattus norvegicus (Norway rat) ]

Gene ID: 140586, updated on 22-Nov-2020

Summary

Official Symbol
Sox9provided by RGD
Official Full Name
SRY-box transcription factor 9provided by RGD
Primary source
RGD:620474
See related
Ensembl:ENSRNOG00000002607
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
SRY
Summary
transcription factor; involved in chondrocyte differentiation and cartilage formation [RGD, Feb 2006]
Expression
Biased expression in Brain (RPKM 21.4), Testes (RPKM 20.4) and 7 other tissues See more
Orthologs

Genomic context

See Sox9 in Genome Data Viewer
Location:
10q32.1
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (101288528..101294030)
106 current Rn_Celera (GCF_000002265.2) 10 AC_000078.1 (96424278..96429703)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (100964754..100970581)

Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103693474 Neighboring gene uncharacterized LOC108352155 Neighboring gene uncharacterized LOC102549422 Neighboring gene uncharacterized LOC102549521

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
DNA binding ISO
Inferred from Sequence Orthology
more info
 
DNA-binding transcription activator activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription activator activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
 
DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription factor activity, RNA polymerase II-specific ISO
Inferred from Sequence Orthology
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II cis-regulatory region sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
bHLH transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
beta-catenin binding ISO
Inferred from Sequence Orthology
more info
 
chromatin binding ISO
Inferred from Sequence Orthology
more info
 
chromatin binding ISS
Inferred from Sequence or Structural Similarity
more info
 
cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
cis-regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
cis-regulatory region sequence-specific DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
pre-mRNA intronic binding ISO
Inferred from Sequence Orthology
more info
 
protein kinase A catalytic subunit binding ISO
Inferred from Sequence Orthology
more info
 
sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
ERK1 and ERK2 cascade ISS
Inferred from Sequence or Structural Similarity
more info
 
Harderian gland development ISO
Inferred from Sequence Orthology
more info
 
Notch signaling pathway ISO
Inferred from Sequence Orthology
more info
 
Sertoli cell development IEP
Inferred from Expression Pattern
more info
PubMed 
Sertoli cell development ISO
Inferred from Sequence Orthology
more info
 
Sertoli cell differentiation ISO
Inferred from Sequence Orthology
more info
 
Sertoli cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
anterior head development ISO
Inferred from Sequence Orthology
more info
 
aortic valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
astrocyte fate commitment ISO
Inferred from Sequence Orthology
more info
 
branching involved in ureteric bud morphogenesis ISO
Inferred from Sequence Orthology
more info
 
bronchus cartilage development ISO
Inferred from Sequence Orthology
more info
 
cAMP-mediated signaling IDA
Inferred from Direct Assay
more info
PubMed 
cAMP-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
cartilage condensation ISO
Inferred from Sequence Orthology
more info
 
cartilage condensation ISS
Inferred from Sequence or Structural Similarity
more info
 
cartilage development IEP
Inferred from Expression Pattern
more info
PubMed 
cartilage development ISO
Inferred from Sequence Orthology
more info
 
cartilage development ISS
Inferred from Sequence or Structural Similarity
more info
 
cartilage development NAS
Non-traceable Author Statement
more info
PubMed 
cartilage development TAS
Traceable Author Statement
more info
PubMed 
cell differentiation ISO
Inferred from Sequence Orthology
more info
 
cell fate commitment ISO
Inferred from Sequence Orthology
more info
 
cell fate specification ISO
Inferred from Sequence Orthology
more info
 
cell fate specification ISS
Inferred from Sequence or Structural Similarity
more info
 
cell-cell adhesion ISO
Inferred from Sequence Orthology
more info
 
cellular response to epidermal growth factor stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to epidermal growth factor stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular response to heparin ISO
Inferred from Sequence Orthology
more info
 
cellular response to heparin ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular response to interleukin-1 ISO
Inferred from Sequence Orthology
more info
 
cellular response to mechanical stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to mechanical stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
cellular response to retinoic acid ISO
Inferred from Sequence Orthology
more info
 
cellular response to transforming growth factor beta stimulus ISO
Inferred from Sequence Orthology
more info
 
cellular response to transforming growth factor beta stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 
central nervous system development ISO
Inferred from Sequence Orthology
more info
 
chondrocyte development ISO
Inferred from Sequence Orthology
more info
 
chondrocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chondrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
chondrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
chondrocyte differentiation involved in endochondral bone morphogenesis ISO
Inferred from Sequence Orthology
more info
 
chondrocyte differentiation involved in endochondral bone morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
chondrocyte hypertrophy ISO
Inferred from Sequence Orthology
more info
 
chondrocyte hypertrophy ISS
Inferred from Sequence or Structural Similarity
more info
 
chromatin remodeling ISO
Inferred from Sequence Orthology
more info
 
chromatin remodeling ISS
Inferred from Sequence or Structural Similarity
more info
 
cochlea morphogenesis ISO
Inferred from Sequence Orthology
more info
 
cochlea morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
cytoskeleton organization ISO
Inferred from Sequence Orthology
more info
 
endocardial cushion morphogenesis ISO
Inferred from Sequence Orthology
more info
 
endocardial cushion morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
endochondral bone morphogenesis ISO
Inferred from Sequence Orthology
more info
 
endocrine pancreas development ISO
Inferred from Sequence Orthology
more info
 
epidermal growth factor receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
epidermal growth factor receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
epithelial cell proliferation involved in prostatic bud elongation ISO
Inferred from Sequence Orthology
more info
 
epithelial cell proliferation involved in prostatic bud elongation ISS
Inferred from Sequence or Structural Similarity
more info
 
epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
epithelial to mesenchymal transition ISS
Inferred from Sequence or Structural Similarity
more info
 
epithelial tube branching involved in lung morphogenesis ISO
Inferred from Sequence Orthology
more info
 
extracellular matrix organization ISO
Inferred from Sequence Orthology
more info
 
growth plate cartilage chondrocyte growth ISO
Inferred from Sequence Orthology
more info
 
growth plate cartilage chondrocyte growth ISS
Inferred from Sequence or Structural Similarity
more info
 
hair follicle development ISO
Inferred from Sequence Orthology
more info
 
hair follicle development ISS
Inferred from Sequence or Structural Similarity
more info
 
heart development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
heart development ISO
Inferred from Sequence Orthology
more info
 
heart valve development ISO
Inferred from Sequence Orthology
more info
 
heart valve development ISS
Inferred from Sequence or Structural Similarity
more info
 
heart valve formation ISO
Inferred from Sequence Orthology
more info
 
heart valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
heart valve morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
homeostasis of number of cells within a tissue ISO
Inferred from Sequence Orthology
more info
 
intestinal epithelial structure maintenance ISO
Inferred from Sequence Orthology
more info
 
intestinal epithelial structure maintenance ISS
Inferred from Sequence or Structural Similarity
more info
 
intrahepatic bile duct development ISO
Inferred from Sequence Orthology
more info
 
lacrimal gland development ISO
Inferred from Sequence Orthology
more info
 
limb bud formation ISO
Inferred from Sequence Orthology
more info
 
lung epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
lung smooth muscle development ISO
Inferred from Sequence Orthology
more info
 
male germ-line sex determination ISO
Inferred from Sequence Orthology
more info
 
male germ-line sex determination ISS
Inferred from Sequence or Structural Similarity
more info
 
male gonad development ISO
Inferred from Sequence Orthology
more info
 
male gonad development ISS
Inferred from Sequence or Structural Similarity
more info
 
male sex determination ISO
Inferred from Sequence Orthology
more info
 
mammary gland development ISO
Inferred from Sequence Orthology
more info
 
metanephric nephron tubule formation ISO
Inferred from Sequence Orthology
more info
 
metanephric nephron tubule formation ISS
Inferred from Sequence or Structural Similarity
more info
 
metanephric tubule development ISO
Inferred from Sequence Orthology
more info
 
morphogenesis of a branching epithelium ISO
Inferred from Sequence Orthology
more info
 
morphogenesis of a branching epithelium ISS
Inferred from Sequence or Structural Similarity
more info
 
morphogenesis of an epithelium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of beta-catenin-TCF complex assembly ISO
Inferred from Sequence Orthology
more info
 
negative regulation of biomineral tissue development ISO
Inferred from Sequence Orthology
more info
 
negative regulation of biomineral tissue development ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of bone mineralization ISO
Inferred from Sequence Orthology
more info
 
negative regulation of canonical Wnt signaling pathway ISO
Inferred from Sequence Orthology
more info
 
negative regulation of canonical Wnt signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of chondrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of chondrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of epithelial cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of fatty acid oxidation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of fatty acid oxidation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
negative regulation of immune system process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of immune system process ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of mesenchymal cell apoptotic process ISO
Inferred from Sequence Orthology
more info
 
negative regulation of myoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of myoblast differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of ossification ISO
Inferred from Sequence Orthology
more info
 
negative regulation of ossification ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of osteoblast differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of photoreceptor cell differentiation ISO
Inferred from Sequence Orthology
more info
 
negative regulation of photoreceptor cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of pri-miRNA transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
negative regulation of transcription, DNA-templated ISS
Inferred from Sequence or Structural Similarity
more info
 
neural crest cell development ISO
Inferred from Sequence Orthology
more info
 
notochord development ISO
Inferred from Sequence Orthology
more info
 
nucleosome assembly ISO
Inferred from Sequence Orthology
more info
 
nucleosome assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
oligodendrocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
oligodendrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
ossification ISO
Inferred from Sequence Orthology
more info
 
otic vesicle development ISO
Inferred from Sequence Orthology
more info
 
otic vesicle formation ISO
Inferred from Sequence Orthology
more info
 
otic vesicle formation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of branching involved in ureteric bud morphogenesis ISO
Inferred from Sequence Orthology
more info
 
positive regulation of branching involved in ureteric bud morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cartilage development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cartilage development ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cell proliferation involved in heart morphogenesis ISO
Inferred from Sequence Orthology
more info
 
positive regulation of chondrocyte differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of chondrocyte differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of chondrocyte differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of chondrocyte proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of epithelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of epithelial cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
positive regulation of epithelial cell migration ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of epithelial cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of extracellular matrix assembly ISO
Inferred from Sequence Orthology
more info
 
positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
positive regulation of kidney development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of kidney development ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of male gonad development ISO
Inferred from Sequence Orthology
more info
 
positive regulation of male gonad development ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of mesenchymal cell proliferation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mesenchymal cell proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of mesenchymal stem cell differentiation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of mesenchymal stem cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of phosphatidylinositol 3-kinase signaling ISO
Inferred from Sequence Orthology
more info
 
positive regulation of phosphatidylinositol 3-kinase signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of protein catabolic process ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
prostate gland development ISO
Inferred from Sequence Orthology
more info
 
prostate gland morphogenesis ISO
Inferred from Sequence Orthology
more info
 
protein kinase B signaling ISO
Inferred from Sequence Orthology
more info
 
protein kinase B signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
protein localization to nucleus ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex assembly ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of branching involved in lung morphogenesis ISO
Inferred from Sequence Orthology
more info
 
regulation of cell adhesion ISO
Inferred from Sequence Orthology
more info
 
regulation of cell cycle process ISO
Inferred from Sequence Orthology
more info
 
regulation of cell cycle process ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cell differentiation ISO
Inferred from Sequence Orthology
more info
 
regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of cell proliferation involved in tissue homeostasis ISO
Inferred from Sequence Orthology
more info
 
regulation of cell proliferation involved in tissue homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
 
regulation of epithelial cell proliferation involved in lung morphogenesis ISO
Inferred from Sequence Orthology
more info
 
regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
renal vesicle induction ISO
Inferred from Sequence Orthology
more info
 
renal vesicle induction ISS
Inferred from Sequence or Structural Similarity
more info
 
response to fatty acid ISO
Inferred from Sequence Orthology
more info
 
response to fatty acid ISS
Inferred from Sequence or Structural Similarity
more info
 
retina development in camera-type eye ISO
Inferred from Sequence Orthology
more info
 
retina development in camera-type eye ISS
Inferred from Sequence or Structural Similarity
more info
 
retinal rod cell differentiation ISO
Inferred from Sequence Orthology
more info
 
retinal rod cell differentiation ISS
Inferred from Sequence or Structural Similarity
more info
 
signal transduction ISO
Inferred from Sequence Orthology
more info
 
signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 
skeletal system development ISO
Inferred from Sequence Orthology
more info
 
skeletal system development ISS
Inferred from Sequence or Structural Similarity
more info
 
somatic stem cell population maintenance ISO
Inferred from Sequence Orthology
more info
 
somatic stem cell population maintenance ISS
Inferred from Sequence or Structural Similarity
more info
 
spermatogenesis ISO
Inferred from Sequence Orthology
more info
 
spermatogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
tissue homeostasis ISO
Inferred from Sequence Orthology
more info
 
tissue homeostasis ISS
Inferred from Sequence or Structural Similarity
more info
 
trachea cartilage development ISO
Inferred from Sequence Orthology
more info
 
ureter development ISO
Inferred from Sequence Orthology
more info
 
ureter morphogenesis ISO
Inferred from Sequence Orthology
more info
 
ureter smooth muscle cell differentiation ISO
Inferred from Sequence Orthology
more info
 
ureter urothelium development ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 
protein-containing complex ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex ISS
Inferred from Sequence or Structural Similarity
more info
 
transcription regulator complex IDA
Inferred from Direct Assay
more info
PubMed 
transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transcription factor SOX-9
Names
SRY (sex determining region Y)-box 9 (campomelic dysplasia, autosomal sex-reversal)
SRY box 9
SRY-box containing gene 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_080403.1NP_536328.1  transcription factor SOX-9

    See identical proteins and their annotated locations for NP_536328.1

    Status: VALIDATED

    Source sequence(s)
    AABR07030718
    UniProtKB/TrEMBL
    F1LYL9
    Related
    ENSRNOP00000003511.5, ENSRNOT00000003511.6
    Conserved Domains (2) summary
    cd01388
    Location:104174
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    pfam12444
    Location:2294
    Sox_N; Sox developmental protein N terminal

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

    Range
    101288528..101294030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000078.1 Alternate Rn_Celera

    Range
    96424278..96429703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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