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RNF113B ring finger protein 113B [ Homo sapiens (human) ]

Gene ID: 140432, updated on 12-Oct-2019

Summary

Official Symbol
RNF113Bprovided by HGNC
Official Full Name
ring finger protein 113Bprovided by HGNC
Primary source
HGNC:HGNC:17267
See related
Ensembl:ENSG00000139797
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNF161; ZNF183L1; bA10G5.1
Expression
Restricted expression toward testis (RPKM 23.9) See more
Orthologs

Genomic context

See RNF113B in Genome Data Viewer
Location:
13q32.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (98175785..98177269, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (98828039..98829521, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene importin 5 Neighboring gene ferritin light chain pseudogene 8 Neighboring gene uncharacterized LOC105370328 Neighboring gene uncharacterized LOC107984566 Neighboring gene FERM, ARH/RhoGEF and pleckstrin domain protein 1 Neighboring gene RN7SK pseudogene 8 Neighboring gene microRNA 3170

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC26599

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
snoRNA splicing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
U2-type spliceosomal complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RING finger protein 113B
Names
zinc finger protein 183-like 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_178861.5NP_849192.1  RING finger protein 113B

    See identical proteins and their annotated locations for NP_849192.1

    Status: VALIDATED

    Source sequence(s)
    AI935007, AL136300, BC017585
    Consensus CDS
    CCDS9486.1
    UniProtKB/Swiss-Prot
    Q8IZP6
    Related
    ENSP00000267291.6, ENST00000267291.7
    Conserved Domains (3) summary
    COG5152
    Location:174313
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    pfam00642
    Location:191217
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    pfam13923
    Location:256293
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    98175785..98177269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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