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RPS4Y2 ribosomal protein S4 Y-linked 2 [ Homo sapiens (human) ]

Gene ID: 140032, updated on 4-Oct-2020

Summary

Official Symbol
RPS4Y2provided by HGNC
Official Full Name
ribosomal protein S4 Y-linked 2provided by HGNC
Primary source
HGNC:HGNC:18501
See related
Ensembl:ENSG00000280969 MIM:400030
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS4Y2P
Summary
The protein encoded by this gene is a ribosomal protein that is highly similar to RPS4Y1. This gene is located in the male-specific region of the Y chromosome. [provided by RefSeq, Aug 2012]
Expression
Low expression observed in reference dataset See more

Genomic context

See RPS4Y2 in Genome Data Viewer
Location:
Yq11.223
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (20756108..20781032)
105 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (22917954..22942918)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 8, member A1 pseudogene Neighboring gene transducin beta like 1 Y-linked pseudogene 1 Neighboring gene heat shock transcription factor Y-linked 4, pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 17

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
rRNA binding IEA
Inferred from Electronic Annotation
more info
 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
translation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
40S ribosomal protein S4, Y isoform 2
Names
40S ribosomal protein S4, Y
ribosomal protein S4, Y-linked 2 pseudogene
small ribosomal subunit protein eS4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032924.1 RefSeqGene

    Range
    5041..29965
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001039567.3NP_001034656.1  40S ribosomal protein S4, Y isoform 2

    See identical proteins and their annotated locations for NP_001034656.1

    Status: REVIEWED

    Source sequence(s)
    AF497481
    Consensus CDS
    CCDS44028.1
    UniProtKB/Swiss-Prot
    Q8TD47
    Related
    ENSP00000486252.1, ENST00000629237.2
    Conserved Domains (5) summary
    PLN00036
    Location:1260
    PLN00036; 40S ribosomal protein S4; Provisional
    cd06087
    Location:175229
    KOW_RPS4; KOW motif of Ribosomal Protein S4 (RPS4)
    pfam00900
    Location:95169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:339
    RS4NT; RS4NT (NUC023) domain
    pfam16121
    Location:212259
    40S_S4_C; 40S ribosomal protein S4 C-terminus

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    20756108..20781032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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