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SPIN4 spindlin family member 4 [ Homo sapiens (human) ]

Gene ID: 139886, updated on 1-Jun-2020

Summary

Official Symbol
SPIN4provided by HGNC
Official Full Name
spindlin family member 4provided by HGNC
Primary source
HGNC:HGNC:27040
See related
Ensembl:ENSG00000186767
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TDRD28
Orthologs

Genomic context

See SPIN4 in Genome Data Viewer
Location:
Xq11.1
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (63347228..63351332, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (62567107..62571218, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268310 Neighboring gene chromobox 1 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 1278 Neighboring gene Cdc42 guanine nucleotide exchange factor 9 Neighboring gene ARHGEF9 intronic transcript 1

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ44984, MGC133224

Gene Ontology Provided by GOA

Function Evidence Code Pubs
methylated histone binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
methylated histone binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
gamete generation IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012968.3NP_001012986.2  spindlin-4

    See identical proteins and their annotated locations for NP_001012986.2

    Status: VALIDATED

    Source sequence(s)
    AL158203
    Consensus CDS
    CCDS43964.1
    UniProtKB/Swiss-Prot
    Q56A73
    UniProtKB/TrEMBL
    X6R8Y7
    Related
    ENSP00000364018.3, ENST00000374884.3
    Conserved Domains (1) summary
    pfam02513
    Location:119167
    Spin-Ssty; Spin/Ssty Family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    63347228..63351332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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