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FAM199X family with sequence similarity 199, X-linked [ Homo sapiens (human) ]

Gene ID: 139231, updated on 5-Aug-2022

Summary

Official Symbol
FAM199Xprovided by HGNC
Official Full Name
family with sequence similarity 199, X-linkedprovided by HGNC
Primary source
HGNC:HGNC:25195
See related
Ensembl:ENSG00000123575 AllianceGenome:HGNC:25195
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf39
Expression
Ubiquitous expression in brain (RPKM 16.8), fat (RPKM 14.9) and 25 other tissues See more
Orthologs
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Genomic context

See FAM199X in Genome Data Viewer
Location:
Xq22.2
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (104157066..104195902)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (102597649..102627100)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (103411134..103440583)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 53 Neighboring gene uncharacterized LOC286437 Neighboring gene zinc finger CCHC-type containing 18 Neighboring gene ESX homeobox 1 Neighboring gene interleukin 1 receptor accessory protein like 2 Neighboring gene PHB1 pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_207318.4NP_997201.1  protein FAM199X

    See identical proteins and their annotated locations for NP_997201.1

    Status: VALIDATED

    Source sequence(s)
    AI571005, AL049631, AL135959, BC057847
    Consensus CDS
    CCDS35364.1
    UniProtKB/Swiss-Prot
    Q6PEV8, Q96AV3
    UniProtKB/TrEMBL
    B0QYU2
    Related
    ENSP00000417581.1, ENST00000493442.2
    Conserved Domains (1) summary
    pfam15814
    Location:66388
    FAM199X; Protein family FAM199X

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    104157066..104195902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047441826.1XP_047297782.1  protein FAM199X isoform X2

  2. XM_005262079.4XP_005262136.1  protein FAM199X isoform X1

    See identical proteins and their annotated locations for XP_005262136.1

    UniProtKB/Swiss-Prot
    Q6PEV8
    Conserved Domains (1) summary
    pfam15814
    Location:66345
    FAM199X; Protein family FAM199X

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    102597649..102627100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)