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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001100391.3 → NP_001093861.1 RNA-binding Raly-like protein isoform 1
See identical proteins and their annotated locations for NP_001093861.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55252.1
- UniProtKB/Swiss-Prot
-
Q86SE5
- Related
- ENSP00000430128.1, ENST00000517638.5
- Conserved Domains (2) summary
-
- pfam10779
Location:212 → 257
- XhlA; Haemolysin XhlA
- cl17169
Location:28 → 110
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001100392.3 → NP_001093862.1 RNA-binding Raly-like protein isoform 2
See identical proteins and their annotated locations for NP_001093862.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. Variants 2 through 4 encode the same isoform (2), which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Consensus CDS
-
CCDS55253.1
- UniProtKB/Swiss-Prot
-
Q86SE5
- Related
- ENSP00000430394.1, ENST00000522455.5
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001100393.3 → NP_001093863.1 RNA-binding Raly-like protein isoform 2
See identical proteins and their annotated locations for NP_001093863.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. Variants 2 through 4 encode the same isoform (2), which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55253.1
- UniProtKB/Swiss-Prot
-
Q86SE5
- Related
- ENSP00000428667.1, ENST00000521695.5
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001287243.3 → NP_001274172.1 RNA-binding Raly-like protein isoform 3
See identical proteins and their annotated locations for NP_001274172.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and the 5' coding region, initiates translation at a downstream start codon and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS75760.1
- UniProtKB/TrEMBL
-
B3KT61
- Related
- ENSP00000430065.1, ENST00000518566.5
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001287244.2 → NP_001274173.1 RNA-binding Raly-like protein isoform 4
See identical proteins and their annotated locations for NP_001274173.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) contains an alternate 5' terminal exon resulting in a novel 5' UTR and 5' coding region, compared to variant 1. It encodes isoform 4, which is shorter and has a distinct N-terminus compared to isoform 1.
- Source sequence(s)
-
AC009901, AC087368
- Consensus CDS
-
CCDS75761.1
- UniProtKB/Swiss-Prot
-
Q86SE5
- Related
- ENSP00000428807.1, ENST00000523850.5
- Conserved Domains (1) summary
-
- pfam10779
Location:126 → 171
- XhlA; Haemolysin XhlA
-
NM_001354305.2 → NP_001341234.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354306.2 → NP_001341235.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354307.2 → NP_001341236.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354308.2 → NP_001341237.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC027043, AC087368, AC092699
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354309.2 → NP_001341238.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354310.2 → NP_001341239.1 RNA-binding Raly-like protein isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC087368
- Conserved Domains (1) summary
-
- pfam10779
Location:111 → 156
- XhlA; Haemolysin XhlA
-
NM_001354311.2 → NP_001341240.1 RNA-binding Raly-like protein isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (1) summary
-
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354312.2 → NP_001341241.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354313.2 → NP_001341242.1 RNA-binding Raly-like protein isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (1) summary
-
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354314.2 → NP_001341243.1 RNA-binding Raly-like protein isoform 7
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (2) summary
-
- COG1579
Location:195 → 250
- COG1579; Predicted nucleic acid-binding protein, contains Zn-ribbon domain [General function prediction only]
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354315.2 → NP_001341244.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354316.2 → NP_001341245.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354317.2 → NP_001341246.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354318.2 → NP_001341247.1 RNA-binding Raly-like protein isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS75760.1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354319.2 → NP_001341248.1 RNA-binding Raly-like protein isoform 6
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368, AC103816
- Conserved Domains (1) summary
-
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354320.2 → NP_001341249.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354321.2 → NP_001341250.1 RNA-binding Raly-like protein isoform 8
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (3) summary
-
- COG0724
Location:25 → 203
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:201 → 246
- XhlA; Haemolysin XhlA
- cl17169
Location:28 → 110
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354322.2 → NP_001341251.1 RNA-binding Raly-like protein isoform 9
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (2) summary
-
- COG0724
Location:25 → 203
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cl17169
Location:28 → 110
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354323.2 → NP_001341252.1 RNA-binding Raly-like protein isoform 10
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Conserved Domains (1) summary
-
- cl17169
Location:28 → 110
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_001354325.2 → NP_001341254.1 RNA-binding Raly-like protein isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55253.1
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
NM_173848.7 → NP_776247.3 RNA-binding Raly-like protein isoform 2
See identical proteins and their annotated locations for NP_776247.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. Variants 2 through 4 encode the same isoform (2), which has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AC009901, AC012400, AC027043, AC087368
- Consensus CDS
-
CCDS55253.1
- UniProtKB/Swiss-Prot
-
Q86SE5
- Related
- ENSP00000430367.1, ENST00000521268.6
- Conserved Domains (2) summary
-
- pfam10779
Location:199 → 244
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000008.11 Reference GRCh38.p14 Primary Assembly
- Range
-
84182787..84921844
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024447066.2 → XP_024302834.1 RNA-binding Raly-like protein isoform X1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_017013071.2 → XP_016868560.1 RNA-binding Raly-like protein isoform X1
- UniProtKB/TrEMBL
-
B3KT61
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_047421387.1 → XP_047277343.1 RNA-binding Raly-like protein isoform X4
-
XM_024447070.2 → XP_024302838.1 RNA-binding Raly-like protein isoform X7
- Conserved Domains (1) summary
-
- pfam04111
Location:90 → 146
- APG6; Autophagy protein Apg6
-
XM_017013068.2 → XP_016868557.1 RNA-binding Raly-like protein isoform X1
- UniProtKB/TrEMBL
-
B3KT61
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_017013082.2 → XP_016868571.1 RNA-binding Raly-like protein isoform X4
- Conserved Domains (2) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cl17169
Location:20 → 88
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_011517462.4 → XP_011515764.1 RNA-binding Raly-like protein isoform X3
- Conserved Domains (2) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cl17169
Location:20 → 88
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_024447069.2 → XP_024302837.1 RNA-binding Raly-like protein isoform X6
- Conserved Domains (1) summary
-
- pfam04111
Location:98 → 154
- APG6; Autophagy protein Apg6
-
XM_024447067.2 → XP_024302835.1 RNA-binding Raly-like protein isoform X1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_024447068.2 → XP_024302836.1 RNA-binding Raly-like protein isoform X2
- Conserved Domains (2) summary
-
- COG0724
Location:25 → 203
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- cd12605
Location:33 → 101
- RRM_RALYL; RNA recognition motif in vertebrate RNA-binding Raly-like protein (RALYL)
-
XM_024447065.2 → XP_024302833.1 RNA-binding Raly-like protein isoform X1
- Conserved Domains (3) summary
-
- COG0724
Location:12 → 190
- RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
- pfam10779
Location:188 → 233
- XhlA; Haemolysin XhlA
- cl17169
Location:15 → 97
- RRM_SF; RNA recognition motif (RRM) superfamily
-
XM_017013084.3 → XP_016868573.1 RNA-binding Raly-like protein isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060932.1 Alternate T2T-CHM13v2.0
- Range
-
84620396..85359723
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)