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NCLIV_000740 class I chitinase, related [ Neospora caninum Liverpool ]

Gene ID: 13445793, updated on 26-Oct-2024

Summary

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Gene symbol
NCLIV_000740
Gene description
class I chitinase, related
Locus tag
NCLIV_000740
See related
ToxoDB:NCLIV_000740; VEuPathDB:NCLIV_000740
Gene type
protein coding
RNA name
class I chitinase, related
RefSeq status
PROVISIONAL
Organism
Neospora caninum Liverpool (strain: Liverpool)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Sarcocystidae; Neospora
Orthologs
Toxoplasma gondii all
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Genomic context

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See NCLIV_000740 in Genome Data Viewer
Location:
chromosome: Ia
Exon count:
7
Sequence:
Chromosome: Ia; NC_018385.1 (632114..637090)

Chromosome Ia - NC_018385.1Genomic Context describing neighboring genes Neighboring gene tRNA-Asn Neighboring gene putative EF hand domain-containing protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018385.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive evaluation of Toxoplasma gondii VEG and Neospora caninum LIV genomes with tachyzoite stage transcriptome and proteome defines novel transcript features. Ramaprasad A, et al. PLoS One, 2015. PMID 25875305, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
class I chitinase, related

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018385.1 Reference assembly

    Range
    632114..637090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003879566.1 → XP_003879615.1  class I chitinase, related [Neospora caninum Liverpool]

    See identical proteins and their annotated locations for XP_003879615.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F0V789
    Conserved Domains (1) summary
    cl00222
    Location:135 → 314
    lysozyme_like; lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. ...
Nucleotide Protein
Heading Accession and Version

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