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LDBPK_343210 cleavage and polyadenylation specificity factor, putative [ Leishmania donovani ]

Gene ID: 13387359, updated on 11-Apr-2024

Summary

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Gene symbol
LDBPK_343210
Gene description
cleavage and polyadenylation specificity factor, putative
Locus tag
LDBPK_343210
Gene type
protein coding
RNA name
cleavage and polyadenylation specificity factor, putative
RefSeq status
PROVISIONAL
Organism
Leishmania donovani (strain: BPK282A1)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Leishmaniinae; Leishmania
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Genomic context

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Location:
chromosome: 34
Exon count:
1
Sequence:
Chromosome: 34; NC_018261.1 (1357003..1359273)

Chromosome 34 - NC_018261.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein, unknown function Neighboring gene hypothetical protein Neighboring gene DNA topoisomerase IB, large subunit Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_018261.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Downing T, et al. Genome Res, 2011 Dec. PMID 22038251, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing by stem-loop binding and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_018261.1 Reference assembly

    Range
    1357003..1359273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003864432.1 → XP_003864480.1  cleavage and polyadenylation specificity factor, putative [Leishmania donovani]

    See identical proteins and their annotated locations for XP_003864480.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A504WZS7, E9BRB9
    Conserved Domains (3) summary
    smart01098
    Location:489 → 736
    CPSF73-100_C; This is the C-terminal conserved region of the pre-mRNA 3'-end-processing of the polyadenylation factor CPSF-73/CPSF-100 proteins
    COG1236
    Location:27 → 468
    YSH1; RNA processing exonuclease, beta-lactamase fold, Cft2 family [Translation, ribosomal structure and biogenesis]
    cd16292
    Location:26 → 217
    CPSF3-like_MBL-fold; cleavage and polyadenylation specificity factor (CPSF) subunit 3 and related proteins; MBL-fold metallo-hydrolase domain
Nucleotide Protein
Heading Accession and Version

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