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C5orf47 chromosome 5 open reading frame 47 [ Homo sapiens (human) ]

Gene ID: 133491, updated on 13-Mar-2020

Summary

Official Symbol
C5orf47provided by HGNC
Official Full Name
chromosome 5 open reading frame 47provided by HGNC
Primary source
HGNC:HGNC:27026
See related
Ensembl:ENSG00000185056
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 11.9) See more
Orthologs

Genomic context

See C5orf47 in Genome Data Viewer
Location:
5q35.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (173989165..174007524)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173416162..173433143)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr5.4562 Neighboring gene cytoplasmic polyadenylation element binding protein 4 Neighboring gene ribosomal protein L12 pseudogene 22 Neighboring gene uncharacterized LOC102724551 Neighboring gene neuronal vesicle trafficking associated 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

General protein information

Preferred Names
uncharacterized protein C5orf47

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001144954.2NP_001138426.1  uncharacterized protein C5orf47

    See identical proteins and their annotated locations for NP_001138426.1

    Status: VALIDATED

    Source sequence(s)
    BC066964, BC092489
    Consensus CDS
    CCDS47343.1
    UniProtKB/Swiss-Prot
    Q569G3
    Related
    ENSP00000340887.6, ENST00000340147.7
    Conserved Domains (1) summary
    pfam15730
    Location:28176
    DUF4680; Domain of unknown function (DUF4680)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    173989165..174007524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017009028.1XP_016864517.1  uncharacterized protein C5orf47 isoform X1

    UniProtKB/Swiss-Prot
    Q569G3
    Conserved Domains (1) summary
    pfam15730
    Location:28176
    DUF4680; Domain of unknown function (DUF4680)
  2. XM_011534431.1XP_011532733.1  uncharacterized protein C5orf47 isoform X2

    Conserved Domains (1) summary
    pfam15730
    Location:28132
    DUF4680; Domain of unknown function (DUF4680)
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