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TRAM1L1 translocation associated membrane protein 1 like 1 [ Homo sapiens (human) ]

Gene ID: 133022, updated on 7-Jun-2020

Summary

Official Symbol
TRAM1L1provided by HGNC
Official Full Name
translocation associated membrane protein 1 like 1provided by HGNC
Primary source
HGNC:HGNC:28371
See related
Ensembl:ENSG00000174599 MIM:617505
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs

Genomic context

See TRAM1L1 in Genome Data Viewer
Location:
4q26
Exon count:
1
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (117083554..117085576, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (118004710..118006736, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986306 Neighboring gene hepatitis A virus cellular receptor 1 pseudogene 2 Neighboring gene uncharacterized LOC105377387 Neighboring gene uncharacterized LOC105377388 Neighboring gene long intergenic non-protein coding RNA 2262 Neighboring gene long intergenic non-protein coding RNA 2263

Genomic regions, transcripts, and products

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide association study (GWAS) for bronchopulmonary dysplasia.
NHGRI GWA Catalog
Common body mass index-associated variants confer risk of extreme obesity.
NHGRI GWA Catalog
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC26568

Gene Ontology Provided by GOA

Process Evidence Code Pubs
SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
rough endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
translocating chain-associated membrane protein 1-like 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152402.3NP_689615.2  translocating chain-associated membrane protein 1-like 1

    See identical proteins and their annotated locations for NP_689615.2

    Status: VALIDATED

    Source sequence(s)
    BC030831, BX423039, CA415689, DB099839
    Consensus CDS
    CCDS3707.1
    UniProtKB/Swiss-Prot
    Q8N609
    Related
    ENSP00000309402.4, ENST00000310754.5
    Conserved Domains (2) summary
    smart00724
    Location:117326
    TLC; TRAM, LAG1 and CLN8 homology domains
    pfam08390
    Location:50115
    TRAM1; TRAM1-like protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    117083554..117085576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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