U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Defa3 defensin, alpha, 3 [ Mus musculus (house mouse) ]

Gene ID: 13237, updated on 8-Dec-2022

Summary

Official Symbol
Defa3provided by MGI
Official Full Name
defensin, alpha, 3provided by MGI
Primary source
MGI:MGI:94883
See related
Ensembl:ENSMUSG00000074440 AllianceGenome:MGI:94883
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Defa27; Defcr3; Defcr-3
Summary
Predicted to enable protein homodimerization activity. Acts upstream of or within response to bacterium and response to xenobiotic stimulus. Located in extracellular space. Orthologous to several human genes including DEFA1 (defensin alpha 1); DEFA3 (defensin alpha 3); and DEFA4 (defensin alpha 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 3192.2), small intestine adult (RPKM 658.9) and 1 other tissue See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Defa3 in Genome Data Viewer
Location:
8; 8 A2
Exon count:
2
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (21777425..21778393)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21287409..21288377)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin, alpha, 40 Neighboring gene defensin, alpha, pseudogene 8 Neighboring gene defensin, alpha, 5 Neighboring gene defensin, alpha, 27

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables pore-forming activity ISO
Inferred from Sequence Orthology
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in midbody ISO
Inferred from Sequence Orthology
more info
 
located_in secretory granule ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
alpha-defensin 3
Names
defensin, alpha, 27
defensin-related cryptdin-3

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007850.2NP_031876.1  alpha-defensin 3 precursor

    See identical proteins and their annotated locations for NP_031876.1

    Status: VALIDATED

    Source sequence(s)
    AC129174
    Consensus CDS
    CCDS40270.1
    UniProtKB/Swiss-Prot
    P28310, Q499K7
    Related
    ENSMUSP00000096492.4, ENSMUST00000098893.4
    Conserved Domains (2) summary
    pfam00323
    Location:6492
    Defensin_1; Mammalian defensin
    pfam00879
    Location:1551
    Defensin_propep; Defensin propeptide

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    21777425..21778393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)