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LOC131066130 alpha pinene synthase, chloroplastic [ Cryptomeria japonica (Japanese cedar) ]

Gene ID: 131066130, updated on 23-Oct-2023
Gene symbol
LOC131066130
Gene description
alpha pinene synthase, chloroplastic
Locus tag
SUGI_0024240
Gene type
protein coding
RefSeq status
MODEL
Organism
Cryptomeria japonica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Pinopsida; Pinidae; Conifers II; Cupressales; Cupressaceae; Cryptomeria
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See LOC131066130 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_08 current Sugi_1.0 (GCF_030272615.1) 1 NC_081405.1 (185075604..185079756, complement)
RS_2023_06 previous assembly CJA_r1.0 (GCF_027924625.1) Unplaced Scaffold NW_026648890.1 (3071657..3075793)

Chromosome 1 - NC_081405.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131066149 Neighboring gene secoisolariciresinol dehydrogenase-like Neighboring gene alpha pinene synthase, chloroplastic Neighboring gene alpha pinene synthase, chloroplastic-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don). Mishima K, et al. BMC Genomics, 2018 Apr 23. PMID 29685102, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in diterpenoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
alpha pinene synthase, chloroplastic

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RefSeqs of Annotated Genomes: GCF_030272615.1-RS_2023_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sugi_1.0 Primary Assembly

Genomic

  1. NC_081405.1 Reference Sugi_1.0 Primary Assembly

    Range
    185075604..185079756 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058000835.2 → XP_057856818.2  alpha pinene synthase, chloroplastic

Nucleotide Protein
Heading Accession and Version

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