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SPATA3 spermatogenesis associated 3 [ Homo sapiens (human) ]

Gene ID: 130560, updated on 12-Oct-2019

Summary

Official Symbol
SPATA3provided by HGNC
Official Full Name
spermatogenesis associated 3provided by HGNC
Primary source
HGNC:HGNC:17884
See related
Ensembl:ENSG00000173699
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TSARG1
Expression
Restricted expression toward testis (RPKM 15.8) See more
Orthologs

Genomic context

See SPATA3 in Genome Data Viewer
Location:
2q37.1
Exon count:
11
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (230996124..231019938)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (231860839..231884572)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 55 Neighboring gene COX20 pseudogene 2 Neighboring gene SPATA3 antisense RNA 1 (head to head) Neighboring gene uncharacterized LOC112268432 Neighboring gene chromosome 2 open reading frame 72 Neighboring gene proteasome 26S subunit, non-ATPase 1 Neighboring gene 5-hydroxytryptamine receptor 2B

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
spermatogenesis-associated protein 3
Names
testis and spermatogenesis cell apoptosis related gene 1
testis and spermatogenesis cell-related protein 1
testis spermatocyte apoptosis-related protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_139073.3NP_620712.2  spermatogenesis-associated protein 3

    See identical proteins and their annotated locations for NP_620712.2

    Status: VALIDATED

    Source sequence(s)
    AC105344, BC047704, DB034232, DB446786
    Consensus CDS
    CCDS2481.1
    UniProtKB/Swiss-Prot
    Q8NHX4
    Related
    ENSP00000403804.2, ENST00000433428.6
    Conserved Domains (2) summary
    pfam12238
    Location:1856
    MSA-2c; Merozoite surface antigen 2c
    pfam15662
    Location:1191
    SPATA3; Spermatogenesis-associated protein 3 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    230996124..231019938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017003363.2XP_016858852.1  spermatogenesis-associated protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q8NHX4
    Related
    ENSP00000388741.1, ENST00000455816.1
    Conserved Domains (2) summary
    pfam12238
    Location:1856
    MSA-2c; Merozoite surface antigen 2c
    pfam15662
    Location:1191
    SPATA3; Spermatogenesis-associated protein 3 family
  2. XM_005246303.2XP_005246360.1  spermatogenesis-associated protein 3 isoform X1

    See identical proteins and their annotated locations for XP_005246360.1

    UniProtKB/Swiss-Prot
    Q8NHX4
    Conserved Domains (2) summary
    pfam12238
    Location:1856
    MSA-2c; Merozoite surface antigen 2c
    pfam15662
    Location:1191
    SPATA3; Spermatogenesis-associated protein 3 family

RNA

  1. XR_001738626.2 RNA Sequence

  2. XR_001738624.2 RNA Sequence

  3. XR_001738625.1 RNA Sequence

  4. XR_001738628.1 RNA Sequence

  5. XR_002959241.1 RNA Sequence

  6. XR_001738627.2 RNA Sequence

  7. XR_922856.2 RNA Sequence

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