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Csn3 casein kappa [ Mus musculus (house mouse) ]

Gene ID: 12994, updated on 24-Oct-2019

Summary

Official Symbol
Csn3provided by MGI
Official Full Name
casein kappaprovided by MGI
Primary source
MGI:MGI:107461
See related
Ensembl:ENSMUSG00000001622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Csnk; CSN10; AW208918
Expression
Restricted expression toward mammary gland adult (RPKM 13.7) See more
Orthologs

Genomic context

See Csn3 in Genome Data Viewer
Location:
5 E1; 5 43.56 cM
Exon count:
6
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (87925579..87932550)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (88354658..88361289)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene odontogenic, ameloblast asssociated Neighboring gene RIKEN cDNA 1700066N21 gene Neighboring gene cDNA sequence BC037156 Neighboring gene cDNA sequence BC051076 Neighboring gene calcium binding protein, spermatid specific 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
lactation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lactation IMP
Inferred from Mutant Phenotype
more info
PubMed 
lactation ISO
Inferred from Sequence Orthology
more info
 
protein stabilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein stabilization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356570.1NP_001343499.1  kappa-casein isoform a precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AC022298, AK164788
    Consensus CDS
    CCDS19396.1
    Related
    ENSMUSP00000001667.6, ENSMUST00000001667.12
    Conserved Domains (1) summary
    pfam00997
    Location:22180
    Casein_kappa; Kappa casein
  2. NM_001356571.1NP_001343500.1  kappa-casein isoform b precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 3' UTR and lacks an alternate in-frame exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    AC022298
    Conserved Domains (1) summary
    pfam00997
    Location:20170
    Casein_kappa; Kappa casein
  3. NM_007786.5NP_031812.2  kappa-casein isoform a precursor

    See identical proteins and their annotated locations for NP_031812.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AC022298, AK142673
    Consensus CDS
    CCDS19396.1
    UniProtKB/Swiss-Prot
    P06796
    Related
    ENSMUSP00000108896.2, ENSMUST00000113271.2
    Conserved Domains (1) summary
    pfam00997
    Location:22180
    Casein_kappa; Kappa casein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p6 C57BL/6J

    Range
    87925579..87932550
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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