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Crygc crystallin, gamma C [ Mus musculus (house mouse) ]

Gene ID: 12966, updated on 16-Oct-2021

Summary

Official Symbol
Crygcprovided by MGI
Official Full Name
crystallin, gamma Cprovided by MGI
Primary source
MGI:MGI:88523
See related
Ensembl:ENSMUSG00000025952
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cryg-5
Expression
Restricted expression toward genital fat pad adult (RPKM 15.1) See more
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Genomic context

See Crygc in Genome Data Viewer
Location:
1 C2; 1 32.81 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (65110684..65112691, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (65071525..65073532, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 1 NC_000067.5 (65118105..65120095, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene crystallin, gamma E Neighboring gene crystallin, gamma D Neighboring gene crystallin, gamma B Neighboring gene malic enzyme, supernatant pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables structural constituent of eye lens IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of eye lens TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in lens development in camera-type eye IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in visual perception IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in visual perception ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
gamma-crystallin C
Names
gamma-C-crystallin
gammaC-crystallin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082573.2NP_001076042.1  gamma-crystallin C isoform 2

    See identical proteins and their annotated locations for NP_001076042.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region compared to variant 1. It encodes isoform 2 which has one additional amino acid compared to isoform 1.
    Source sequence(s)
    CJ066821, CK627566, EF426302
    Consensus CDS
    CCDS35600.1
    UniProtKB/TrEMBL
    A3RLD5
    Related
    ENSMUSP00000109698.2, ENSMUST00000114064.3
    Conserved Domains (2) summary
    smart00247
    Location:382
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:90171
    Crystall; Beta/Gamma crystallin
  2. NM_007775.2NP_031801.1  gamma-crystallin C isoform 1

    See identical proteins and their annotated locations for NP_031801.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    CJ066821, CK627566, EF426301
    Consensus CDS
    CCDS15012.1
    UniProtKB/Swiss-Prot
    Q61597
    UniProtKB/TrEMBL
    A3RLD4
    Related
    ENSMUSP00000027089.9, ENSMUST00000027089.15
    Conserved Domains (2) summary
    smart00247
    Location:382
    XTALbg; Beta/gamma crystallins
    pfam00030
    Location:89170
    Crystall; Beta/Gamma crystallin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    65110684..65112691 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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