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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001113330.1 → NP_001106801.1 cone-rod homeobox protein isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains a different 5' end exon compared to transcript variant 1 and initiates translation from an in-frame, upstream AUG, resulting in a longer isoform (2) with an unique N-terminus compared to isoform 1.
- Source sequence(s)
-
AK139691, BC016502
- Consensus CDS
-
CCDS52035.1
- UniProtKB/TrEMBL
-
A0A0A0MQN6
- Related
- ENSMUSP00000134400.3, ENSMUST00000174318.8
- Conserved Domains (2) summary
-
- pfam00046
Location:67 → 117
- Homeobox; Homeobox domain
- pfam03529
Location:188 → 273
- TF_Otx; Otx1 transcription factor
-
NM_007770.4 → NP_031796.1 cone-rod homeobox protein isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the more predominant transcript and encodes the shorter isoform (1)
- Source sequence(s)
-
BC016502, BG403985
- Consensus CDS
-
CCDS20840.1
- UniProtKB/Swiss-Prot
-
O54751
- UniProtKB/TrEMBL
-
Q543C9
- Related
- ENSMUSP00000043436.7, ENSMUST00000044434.13
- Conserved Domains (2) summary
-
- pfam00046
Location:43 → 93
- Homeobox; Homeobox domain
- pfam03529
Location:164 → 249
- TF_Otx; Otx1 transcription factor
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000073.7 Reference GRCm39 C57BL/6J
- Range
-
15599872..15613880 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)