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C20orf141 chromosome 20 open reading frame 141 [ Homo sapiens (human) ]

Gene ID: 128653, updated on 23-Nov-2021

Summary

Official Symbol
C20orf141provided by HGNC
Official Full Name
chromosome 20 open reading frame 141provided by HGNC
Primary source
HGNC:HGNC:16134
See related
Ensembl:ENSG00000258713
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
dJ860F19.4
Expression
Restricted expression toward testis (RPKM 27.6) See more
Orthologs
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Genomic context

See C20orf141 in Genome Data Viewer
Location:
20p13
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (2814987..2815830)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (2795633..2796476)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein L19 pseudogene 1 Neighboring gene carboxypeptidase X, M14 family member 1 Neighboring gene transmembrane protein 239 Neighboring gene CRISPRi-validated cis-regulatory element chr20.196

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
White matter integrity as an intermediate phenotype: exploratory genome-wide association analysis in individuals at high risk of bipolar disorder.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC26144

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein C20orf141

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_053067.1 RefSeqGene

    Range
    5001..5844
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001256538.2NP_001243467.1  uncharacterized protein C20orf141

    See identical proteins and their annotated locations for NP_001243467.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK312218, BX094374
    Consensus CDS
    CCDS13034.1
    UniProtKB/Swiss-Prot
    Q9NUB4
    UniProtKB/TrEMBL
    B2R5K4
    Related
    ENSP00000473907.1, ENST00000603872.2
  2. NM_080739.2NP_542777.1  uncharacterized protein C20orf141

    See identical proteins and their annotated locations for NP_542777.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) and variant 2 encode the same protein.
    Source sequence(s)
    BC014591
    Consensus CDS
    CCDS13034.1
    UniProtKB/Swiss-Prot
    Q9NUB4
    Related
    ENSP00000369963.3, ENST00000380589.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    2814987..2815830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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