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AgaP_AGAP008528 AGAP008528-PA [ Anopheles gambiae str. PEST ]

Gene ID: 1277444, updated on 28-Apr-2018

Summary

Gene symbol
AgaP_AGAP008528
Gene description
AGAP008528-PA
Primary source
VectorBase:AGAP008528
Locus tag
AgaP_AGAP008528
Gene type
protein coding
RNA name
AGAP008528-RA
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000008587; ENSANGG00000008587

Genomic context

See AgaP_AGAP008528 in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
6
Sequence:
Chromosome: 3R; NT_078268.4 (11874939..11880654)

Chromosome 3R - NT_078268.4Genomic Context describing neighboring genes Neighboring gene AGAP008526-PA Neighboring gene AGAP008527-PA Neighboring gene AGAP008529-PA Neighboring gene AGAP008530-PA

Pathways from BioSystems

  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • mRNA processing, organism-specific biosystem (from WikiPathways)
    mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...

General gene information

Homology

  • Homologs of the AgaP_AGAP008528 gene: The AgaP_AGAP008528 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.

General protein information

Preferred Names
AGAP008528-PA
XP_316912.4
  • AGAP008528-PA encoded by AGAP008528-RA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078268.4 Reference assembly

    Range
    11874939..11880654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_316912.4XP_316912.4  AGAP008528-PA, partial [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_316912.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7Q4Q1
    Conserved Domains (5) summary
    smart00847
    Location:9181000
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:4841119
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:542675
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:700856
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam07717
    Location:10441135
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
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