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OSCP1 organic solute carrier partner 1 [ Homo sapiens (human) ]

Gene ID: 127700, updated on 1-Jun-2020

Summary

Official Symbol
OSCP1provided by HGNC
Official Full Name
organic solute carrier partner 1provided by HGNC
Primary source
HGNC:HGNC:29971
See related
Ensembl:ENSG00000116885 MIM:608854
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NOR1; C1orf102
Expression
Biased expression in testis (RPKM 27.5), thyroid (RPKM 6.0) and 13 other tissues See more
Orthologs

Genomic context

See OSCP1 in Genome Data Viewer
Location:
1p34.3
Exon count:
13
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (36417906..36450485, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (36883507..36916086, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene LSM10, U7 small nuclear RNA associated Neighboring gene RNA, U4 small nuclear 27, pseudogene Neighboring gene small nucleolar RNA, H/ACA box 63C Neighboring gene uncharacterized LOC107984940 Neighboring gene Sharpr-MPRA regulatory region 11440 Neighboring gene mitochondrial ribosomal protein S15 Neighboring gene colony stimulating factor 3 receptor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC26685

Gene Ontology Provided by GOA

Function Evidence Code Pubs
transmembrane transporter activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
Process Evidence Code Pubs
drug transmembrane export IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
basal plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
protein OSCP1
Names
organic solute carrier protein 1
organic solute transport protein 1
oxidored nitro domain containing protein
oxidored-nitro domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330493.1NP_001317422.1  protein OSCP1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (3).
    Source sequence(s)
    AC119675
    Consensus CDS
    CCDS81301.1
    UniProtKB/Swiss-Prot
    Q8WVF1
    Related
    ENSP00000349052.5, ENST00000356637.9
  2. NM_145047.5NP_659484.4  protein OSCP1 isoform 1

    See identical proteins and their annotated locations for NP_659484.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an alternate in-frame exon compared to variant 3. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 3.
    Source sequence(s)
    AW136490, BC018069, DA297022
    Consensus CDS
    CCDS409.2
    UniProtKB/Swiss-Prot
    Q8WVF1
    Related
    ENSP00000235532.5, ENST00000235532.9
    Conserved Domains (1) summary
    pfam10188
    Location:18189
    Oscp1; Organic solute transport protein 1
  3. NM_206837.3NP_996668.1  protein OSCP1 isoform 2

    See identical proteins and their annotated locations for NP_996668.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon and differs in the 3' coding region and 3' UTR compared to variant 3. The resulting isoform (2) lacks an alternate internal segment and has a shorter and distinct C-terminus compared to isoform 3.
    Source sequence(s)
    AF086535, BU854079, CN430132, DA297022
    Consensus CDS
    CCDS410.1
    UniProtKB/Swiss-Prot
    Q8WVF1
    Related
    ENSP00000346216.3, ENST00000354267.3
    Conserved Domains (1) summary
    pfam10188
    Location:18172
    Oscp1; Organic solute transport protein 1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    36417906..36450485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011540680.2XP_011538982.1  protein OSCP1 isoform X1

    Conserved Domains (1) summary
    pfam10188
    Location:17171
    Oscp1; Organic solute transport protein 1
  2. XM_017000303.2XP_016855792.1  protein OSCP1 isoform X4

    Related
    ENSP00000396417.3, ENST00000445843.7
  3. XM_005270462.2XP_005270519.1  protein OSCP1 isoform X3

    Conserved Domains (1) summary
    pfam10188
    Location:18199
    Oscp1; Organic solute transport protein 1
  4. XM_011540681.3XP_011538983.1  protein OSCP1 isoform X2

    Conserved Domains (1) summary
    pfam10188
    Location:10161
    Oscp1; Organic solute transport protein 1
  5. XM_005270463.3XP_005270520.1  protein OSCP1 isoform X5

    Conserved Domains (1) summary
    pfam10188
    Location:18182
    Oscp1; Organic solute transport protein 1

RNA

  1. XR_001736978.1 RNA Sequence

  2. XR_001736979.2 RNA Sequence

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