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AgaP_AGAP005711 AGAP005711-PA [ Anopheles gambiae str. PEST ]

Gene ID: 1276380, updated on 28-Apr-2018

Summary

Gene symbol
AgaP_AGAP005711
Gene description
AGAP005711-PA
Primary source
VectorBase:AGAP005711
Locus tag
AgaP_AGAP005711
Gene type
protein coding
RNA name
AGAP005711-RA
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000003430; ENSANGG00000003430

Genomic context

See AgaP_AGAP005711 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Sequence:
Chromosome: 2L; NT_078265.2 (19260916..19275432)

Chromosome 2L - NT_078265.2Genomic Context describing neighboring genes Neighboring gene AGAP005709-PA Neighboring gene AGAP005710-PA Neighboring gene AGAP005712-PA;AGAP005712-PB;AGAP005712-PC Neighboring gene AGAP005713-PA

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

General protein information

Preferred Names
AGAP005711-PA
XP_315720.4
  • AGAP005711-PA encoded by AGAP005711-RA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078265.2 Reference assembly

    Range
    19260916..19275432
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_315720.4XP_315720.4  AGAP005711-PA [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_315720.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7Q6R8
    Conserved Domains (5) summary
    smart00091
    Location:86149
    PAS; PAS domain
    cd00083
    Location:1263
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:246347
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:86149
    PAS; PAS fold
    pfam14598
    Location:246349
    PAS_11; PAS domain
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