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AgaP_AGAP005655 AGAP005655-PA [ Anopheles gambiae str. PEST ]

Gene ID: 1276339, updated on 28-Apr-2018

Summary

Gene symbol
AgaP_AGAP005655
Gene description
AGAP005655-PA
Primary source
VectorBase:AGAP005655
Locus tag
AgaP_AGAP005655
Gene type
protein coding
RNA name
AGAP005655-RA
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000005508; ENSANGG00000005508

Genomic context

See AgaP_AGAP005655 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
9
Sequence:
Chromosome: 2L; NT_078265.2 (18335094..18338289)

Chromosome 2L - NT_078265.2Genomic Context describing neighboring genes Neighboring gene AGAP005653-PA Neighboring gene AGAP005654-PA Neighboring gene AGAP005656-PA Neighboring gene AGAP005657-PA

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

General gene information

Homology

General protein information

Preferred Names
AGAP005655-PA
XP_556301.3
  • AGAP005655-PA encoded by AGAP005655-RA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078265.2 Reference assembly

    Range
    18335094..18338289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_556301.3XP_556301.3  AGAP005655-PA [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_556301.3

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q5TRI4
    Conserved Domains (5) summary
    smart00091
    Location:125183
    PAS; PAS domain
    cd00083
    Location:45105
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:335430
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:126228
    PAS; PAS fold
    pfam14598
    Location:334436
    PAS_11; PAS domain
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