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Taf12 TATA-box binding protein associated factor 12 [ Anopheles gambiae (African malaria mosquito) ]

Gene ID: 1273807, updated on 22-Jun-2024

Summary

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Gene symbol
Taf12
Gene description
TATA-box binding protein associated factor 12
See related
VectorBase:AGAMI1_012327
Gene type
protein coding
RefSeq status
MODEL
Organism
Anopheles gambiae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Also known as
AGAP003135
Orthologs
fruit fly all
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Genomic context

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See Taf12 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 2 NC_064601.1 (32878009..32879150, complement)

Chromosome 2 - NC_064601.1Genomic Context describing neighboring genes Neighboring gene DALR anticodon-binding domain-containing protein 3 Neighboring gene E3 ubiquitin-protein ligase Nedd4 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP2 Neighboring gene Branched chain keto acid dehydrogenase E1 subunit alpha Neighboring gene acylphosphatase-2-like Neighboring gene bromodomain adjacent to zinc finger domain protein 1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_064601.1 Chromosome 2 Reference idAnoGambNW_F1_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SAGA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SLIK (SAGA-like) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 12
Names
AGAP003135-PA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference idAnoGambNW_F1_1 Primary Assembly

Genomic

  1. NC_064601.1 Reference idAnoGambNW_F1_1 Primary Assembly

    Range
    32878009..32879150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_312822.6 → XP_312822.5  transcription initiation factor TFIID subunit 12

    See identical proteins and their annotated locations for XP_312822.5

    UniProtKB/TrEMBL
    Q7QBK4
    Conserved Domains (1) summary
    cd07981
    Location:52 → 120
    TAF12; TATA Binding Protein (TBP) Associated Factor 12
Nucleotide Protein Strain
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