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ERICH3 glutamate rich 3 [ Homo sapiens (human) ]

Gene ID: 127254, updated on 11-Jun-2021

Summary

Official Symbol
ERICH3provided by HGNC
Official Full Name
glutamate rich 3provided by HGNC
Primary source
HGNC:HGNC:25346
See related
Ensembl:ENSG00000178965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf173
Expression
Biased expression in testis (RPKM 11.4), brain (RPKM 6.8) and 2 other tissues See more
Orthologs
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Genomic context

See ERICH3 in Genome Data Viewer
Location:
1p31.1
Exon count:
19
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (74568113..74674343, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (75033807..75139476, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene FPGT-TNNI3K readthrough Neighboring gene fucose-1-phosphate guanylyltransferase Neighboring gene TNNI3 interacting kinase Neighboring gene uncharacterized LOC105378805 Neighboring gene leucine rich repeat containing 53 Neighboring gene ERICH3 antisense RNA 1 Neighboring gene crystallin zeta Neighboring gene tRNA-yW synthesizing protein 3 homolog

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC90412, DKFZp547I048, DKFZp761G1720, DKFZp781L0319

General protein information

Preferred Names
glutamate-rich protein 3
Names
RP11-653A5.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002912.5NP_001002912.4  glutamate-rich protein 3

    See identical proteins and their annotated locations for NP_001002912.4

    Status: VALIDATED

    Source sequence(s)
    AC096950, AK127470, AL834414, BI832067, BX470253
    Consensus CDS
    CCDS30755.1
    UniProtKB/Swiss-Prot
    Q5RHP9
    Related
    ENSP00000322609.5, ENST00000326665.10
    Conserved Domains (1) summary
    pfam15257
    Location:301404
    DUF4590; Domain of unknown function (DUF4590)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    74568113..74674343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017000274.1XP_016855763.1  glutamate-rich protein 3 isoform X1

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (1) summary
    pfam15257
    Location:301404
    DUF4590; Domain of unknown function (DUF4590)
  2. XM_017000277.1XP_016855766.1  glutamate-rich protein 3 isoform X4

    Conserved Domains (2) summary
    COG5271
    Location:232576
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:580814
    2A1904; K+-dependent Na+/Ca+ exchanger
  3. XM_017000276.1XP_016855765.1  glutamate-rich protein 3 isoform X3

    Conserved Domains (2) summary
    COG5271
    Location:246590
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:594828
    2A1904; K+-dependent Na+/Ca+ exchanger
  4. XM_017000284.1XP_016855773.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  5. XM_017000282.1XP_016855771.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  6. XM_017000278.1XP_016855767.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  7. XM_017000285.2XP_016855774.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  8. XM_017000280.2XP_016855769.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  9. XM_017000283.2XP_016855772.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  10. XM_017000279.2XP_016855768.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  11. XM_017000281.1XP_016855770.1  glutamate-rich protein 3 isoform X5

    UniProtKB/Swiss-Prot
    Q5RHP9
    Conserved Domains (2) summary
    COG5271
    Location:186530
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR00927
    Location:534768
    2A1904; K+-dependent Na+/Ca+ exchanger
  12. XM_017000275.1XP_016855764.1  glutamate-rich protein 3 isoform X2

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