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AgaP_AGAP004078 AGAP004078-PA;AGAP004078-PB [ Anopheles gambiae str. PEST ]

Gene ID: 1270877, updated on 28-Apr-2018

Summary

Gene symbol
AgaP_AGAP004078
Gene description
AGAP004078-PA;AGAP004078-PB
Primary source
VectorBase:AGAP004078
Locus tag
AgaP_AGAP004078
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000008629; ENSANGG00000008629

Genomic context

See AgaP_AGAP004078 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
9
Sequence:
Chromosome: 2R; NT_078266.2 (49503353..49510627, complement)

Chromosome 2R - NT_078266.2Genomic Context describing neighboring genes Neighboring gene AGAP004076-PA Neighboring gene AGAP004077-PA Neighboring gene AGAP004079-PA Neighboring gene AGAP004080-PA

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Homology

  • Homologs of the AgaP_AGAP004078 gene: The AgaP_AGAP004078 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

General protein information

Preferred Names
AGAP004078-PA;AGAP004078-PB
XP_003436707.1
  • AGAP004078-PB encoded by AGAP004078-RB
XP_309629.5
  • AGAP004078-PA encoded by AGAP004078-RA

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078266.2 Reference assembly

    Range
    49503353..49510627 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_309629.5XP_309629.5  AGAP004078-PA [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_309629.5

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7QH57
    Conserved Domains (4) summary
    smart00435
    Location:6891060
    TOPEUc; DNA Topoisomerase I (eukaryota)
    pfam01028
    Location:761963
    Topoisom_I; Eukaryotic DNA topoisomerase I, catalytic core
    pfam02919
    Location:544758
    Topoisom_I_N; Eukaryotic DNA topoisomerase I, DNA binding fragment
    pfam14370
    Location:10181086
    Topo_C_assoc; C-terminal topoisomerase domain
  2. XM_003436659.1XP_003436707.1  AGAP004078-PB [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_003436707.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F5HJ60
    Conserved Domains (4) summary
    smart00435
    Location:182553
    TOPEUc; DNA Topoisomerase I (eukaryota)
    pfam01028
    Location:254456
    Topoisom_I; Eukaryotic DNA topoisomerase I, catalytic core
    pfam02919
    Location:37251
    Topoisom_I_N; Eukaryotic DNA topoisomerase I, DNA binding fragment
    pfam14370
    Location:511579
    Topo_C_assoc; C-terminal topoisomerase domain
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