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AgaP_AGAP002177 AGAP002177-PA [ Anopheles gambiae str. PEST ]

Gene ID: 1269378, updated on 28-Apr-2018

Summary

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Gene symbol
AgaP_AGAP002177
Gene description
AGAP002177-PA
Primary source
VectorBase:AGAP002177
Locus tag
AgaP_AGAP002177
Gene type
protein coding
RNA name
AGAP002177-RA
RefSeq status
PROVISIONAL
Organism
Anopheles gambiae str. PEST (strain: PEST)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
Old locus tag
AgaP_ENSANGG00000016950; ENSANGG00000016950

Genomic context

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See AgaP_AGAP002177 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
3
Sequence:
Chromosome: 2R; NT_078266.2 (16912024..16913096)

Chromosome 2R - NT_078266.2Genomic Context describing neighboring genes Neighboring gene AGAP002175-PA Neighboring gene AGAP002176-PA Neighboring gene AGAP002178-PA Neighboring gene AGAP002181-PA;AGAP002181-PB;AGAP002181-PC

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_078266.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Update of the Anopheles gambiae PEST genome assembly. Sharakhova MV, et al. Genome Biol, 2007. PMID 17210077, Free PMC Article
  2. The Anopheles gambiae genome: an update. Mongin E, et al. Trends Parasitol, 2004 Feb. PMID 14747013
  3. The genome sequence of the malaria mosquito Anopheles gambiae. Holt RA, et al. Science, 2002 Oct 4. PMID 12364791

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

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Variation

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Genotypes

Pathways from BioSystems

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  • Exosome, eukaryotes, organism-specific biosystem (from KEGG)
    Exosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; RNA processing
  • Exosome, eukaryotes, conserved biosystem (from KEGG)
    Exosome, eukaryotes, conserved biosystemStructural complex; Genetic information processing; RNA processing
  • RNA degradation, organism-specific biosystem (from KEGG)
    RNA degradation, organism-specific biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...
  • RNA degradation, conserved biosystem (from KEGG)
    RNA degradation, conserved biosystemThe correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay e...

General gene information

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Homology

General protein information

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Preferred Names
AGAP002177-PA
XP_308011.5
  • AGAP002177-PA encoded by AGAP002177-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_078266.2 Reference assembly

    Range
    16912024..16913096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_308011.5 → XP_308011.5  AGAP002177-PA [Anopheles gambiae str. PEST]

    See identical proteins and their annotated locations for XP_308011.5

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7QK69
    Conserved Domains (2) summary
    TIGR02065
    Location:15 → 217
    ECX1; archaeal exosome-like complex exonuclease 1
    cd11372
    Location:15 → 212
    RNase_PH_RRP46; RRP46 subunit of eukaryotic exosome
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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