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CCDC163 coiled-coil domain containing 163 [ Homo sapiens (human) ]

Gene ID: 126661, updated on 25-Jan-2022

Summary

Official Symbol
CCDC163provided by HGNC
Official Full Name
coiled-coil domain containing 163provided by HGNC
Primary source
HGNC:HGNC:27003
See related
Ensembl:ENSG00000280670 AllianceGenome:HGNC:27003
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf231; CCDC163P
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Ubiquitous expression in thyroid (RPKM 2.5), brain (RPKM 1.4) and 25 other tissues See more
Orthologs
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Genomic context

See CCDC163 in Genome Data Viewer
Location:
1p34.1
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (45493863..45500111, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45959538..45965745, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene peptidylprolyl isomerase A pseudogene 36 Neighboring gene Sharpr-MPRA regulatory region 45 Neighboring gene metabolism of cobalamin associated C Neighboring gene peroxiredoxin 1 Neighboring gene high mobility group box 1 pseudogene 48

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein CCDC163
Names
coiled-coil domain containing 163, pseudogene
coiled-coil domain-containing protein 163

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001102601.3NP_001096071.1  transmembrane protein CCDC163 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL451136, BC101256, DC421969
    Related
    ENSP00000486197.1, ENST00000629482.3
  2. NM_001358406.2NP_001345335.1  transmembrane protein CCDC163 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL451136, BC113060, DC421969
    Consensus CDS
    CCDS85969.1
    Related
    ENSP00000487061.1, ENST00000626657.2
  3. NM_001358407.2NP_001345336.1  transmembrane protein CCDC163 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL451136

RNA

  1. NR_033297.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK054714, AL451136
    Related
    ENST00000625766.2
  2. NR_033298.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AL451136, BC101257
    Related
    ENST00000626177.2
  3. NR_152411.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451136
  4. NR_152412.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451136
  5. NR_152413.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451136
  6. NR_152414.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL451136, BC113061, DC421969

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    45493863..45500111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024453044.1XP_024308812.1  transmembrane protein CCDC163 isoform X1

  2. XM_024453045.1XP_024308813.1  transmembrane protein CCDC163 isoform X2

RNA

  1. XR_002959324.1 RNA Sequence

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