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ZNF787 zinc finger protein 787 [ Homo sapiens (human) ]

Gene ID: 126208, updated on 23-Nov-2021

Summary

Official Symbol
ZNF787provided by HGNC
Official Full Name
zinc finger protein 787provided by HGNC
Primary source
HGNC:HGNC:26998
See related
Ensembl:ENSG00000142409
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TIP20
Expression
Ubiquitous expression in colon (RPKM 5.0), spleen (RPKM 4.4) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF787 in Genome Data Viewer
Location:
19q13.43
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (56087366..56121295, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (56598732..56632664, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NLR family pyrin domain containing 5 Neighboring gene long intergenic non-protein coding RNA 1864 Neighboring gene Sharpr-MPRA regulatory region 1998 Neighboring gene zinc finger protein 444 Neighboring gene galanin like peptide

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables sequence-specific double-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 787
Names
TTF-I-interacting peptide 20
transcription termination factor I interacting peptide 20

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_054921.1 RefSeqGene

    Range
    5079..39008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001002836.4NP_001002836.2  zinc finger protein 787 isoform 1

    See identical proteins and their annotated locations for NP_001002836.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC024580, AI037960, BC077728, KF573663
    Consensus CDS
    CCDS42634.1
    UniProtKB/Swiss-Prot
    Q6DD87
    Related
    ENSP00000478557.1, ENST00000610935.2
    Conserved Domains (2) summary
    COG5048
    Location:67200
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:6888
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001351682.2NP_001338611.1  zinc finger protein 787 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC024580, BC037737, HY059733
    Consensus CDS
    CCDS86810.1
    Related
    ENSP00000465647.1, ENST00000587279.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    56087366..56121295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011526445.2XP_011524747.1  zinc finger protein 787 isoform X1

    See identical proteins and their annotated locations for XP_011524747.1

    Conserved Domains (2) summary
    COG5048
    Location:67200
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:6888
    ZF_C2H2; C2H2 Zn finger [structural motif]
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