Sign in to NCBI
Format

Send to:

Choose Destination

ALDH16A1 aldehyde dehydrogenase 16 family member A1 [ Homo sapiens (human) ]

Gene ID: 126133, updated on 2-Oct-2018

Summary

Go to the top of the page Help
Official Symbol
ALDH16A1provided by HGNC
Official Full Name
aldehyde dehydrogenase 16 family member A1provided by HGNC
Primary source
HGNC:HGNC:28114
See related
Ensembl:ENSG00000161618 MIM:613358; Vega:OTTHUMG00000183163
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene encodes a member of the aldehyde dehydrogenase superfamily. The family members act on aldehyde substrates and use nicotinamide adenine dinucleotide phosphate (NADP) as a cofactor. This gene is conserved in chimpanzee, dog, cow, mouse, rat, and zebrafish. The protein encoded by this gene interacts with maspardin, a protein that when truncated is responsible for Mast syndrome. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Apr 2010]
Expression
Ubiquitous expression in spleen (RPKM 10.1), duodenum (RPKM 6.6) and 25 other tissues See more
Orthologs
mouse all

Genomic context

Go to the top of the page Help
See ALDH16A1 in Genome Data Viewer
Location:
19q13.33
Exon count:
19
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 19 NC_000019.10 (49453216..49471050)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (49956473..49974305)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 7 Neighboring gene PIH1 domain containing 1 Neighboring gene fms related tyrosine kinase 3 ligand Neighboring gene ribosomal protein L13a Neighboring gene small nucleolar RNA, C/D box 32A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. ALDH16A1 is a novel non-catalytic enzyme that may be involved in the etiology of gout via protein-protein interactions with HPRT1. Vasiliou V, et al. Chem Biol Interact, 2013 Feb 25. PMID 23348497, Free PMC Article
  2. Interaction of the SPG21 protein ACP33/maspardin with the aldehyde dehydrogenase ALDH16A1. Hanna MC, et al. Neurogenetics, 2009 Jul. PMID 19184135, Free PMC Article
  3. Endogenous human MDM2-C is highly expressed in human cancers and functions as a p53-independent growth activator. Okoro DR, et al. PLoS One, 2013. PMID 24147044, Free PMC Article
  4. A germline-specific class of small RNAs binds mammalian Piwi proteins. Girard A, et al. Nature, 2006 Jul 13. PMID 16751776
  5. Large-scale concatenation cDNA sequencing. Yu W, et al. Genome Res, 1997 Apr. PMID 9110174, Free PMC Article

See all (19) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  1. Both the short and long forms of human ALDH16A1 protein would lack catalytic activity.
    Title: ALDH16A1 is a novel non-catalytic enzyme that may be involved in the etiology of gout via protein-protein interactions with HPRT1.
  2. Data report that maspardin localizes prominently to cytoplasm as well as to membranes, possibly at trans-Golgi network/late endosomal compartments, and that maspardin interacts with the aldehyde dehydrogenase ALDH16A1.
    Title: Interaction of the SPG21 protein ACP33/maspardin with the aldehyde dehydrogenase ALDH16A1.
Submit: New GeneRIF Correction

Phenotypes

Go to the top of the page Help

Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC10204

Gene Ontology Provided by GOA

Function Evidence Code Pubs
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
membrane HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
aldehyde dehydrogenase family 16 member A1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012747.1 RefSeqGene

    Range
    5001..22833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001145396.1 → NP_001138868.1  aldehyde dehydrogenase family 16 member A1 isoform 2

    See identical proteins and their annotated locations for NP_001138868.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an exon in the coding region compared to variant 1 and remains in-frame. The encoded isoform (2) is shorter compared to isoform 1.
    Source sequence(s)
    AK297101, AY007096, DA629821
    Consensus CDS
    CCDS46141.1
    UniProtKB/Swiss-Prot
    Q8IZ83
    Related
    ENSP00000410142.1, OTTHUMP00000271019, ENST00000455361.6, OTTHUMT00000465361
    Conserved Domains (1) summary
    cl11961
    Location:19 → 441
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily

  2. NM_153329.3 → NP_699160.2  aldehyde dehydrogenase family 16 member A1 isoform 1

    See identical proteins and their annotated locations for NP_699160.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK297101, AY007096, BC014895, DA629821, DC364604
    Consensus CDS
    CCDS12766.1
    UniProtKB/Swiss-Prot
    Q8IZ83
    Related
    ENSP00000293350.3, OTTHUMP00000271017, ENST00000293350.8, OTTHUMT00000465358
    Conserved Domains (1) summary
    cl11961
    Location:19 → 492
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p12 Primary Assembly

    Range
    49453216..49471050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011526441.1 → XP_011524743.1  aldehyde dehydrogenase family 16 member A1 isoform X1

    See identical proteins and their annotated locations for XP_011524743.1

    Related
    ENSP00000445088.1, OTTHUMP00000271018, ENST00000540132.5, OTTHUMT00000465359
    Conserved Domains (1) summary
    cl11961
    Location:2 → 463
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily

  2. XM_011526442.1 → XP_011524744.1  aldehyde dehydrogenase family 16 member A1 isoform X2

    See identical proteins and their annotated locations for XP_011524744.1

    Conserved Domains (1) summary
    cl11961
    Location:2 → 463
    ALDH-SF; NAD(P)+-dependent aldehyde dehydrogenase superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IZ83.2 GenPept UniProtKB/Swiss-Prot:Q8IZ83

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous
You are here: NCBI > Genes & Expression > Gene
Support Center