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SWSAP1 SWIM-type zinc finger 7 associated protein 1 [ Homo sapiens (human) ]

Gene ID: 126074, updated on 5-May-2020

Summary

Official Symbol
SWSAP1provided by HGNC
Official Full Name
SWIM-type zinc finger 7 associated protein 1provided by HGNC
Primary source
HGNC:HGNC:26638
See related
Ensembl:ENSG00000173928 MIM:614536
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SWS1AP1; C19orf39; ZSWIM7AP1
Expression
Ubiquitous expression in spleen (RPKM 1.9), testis (RPKM 1.7) and 25 other tissues See more
Orthologs

Genomic context

See SWSAP1 in Genome Data Viewer
Location:
19p13.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (11374666..11376169)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11485383..11487627)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 159 Neighboring gene phospholipid phosphatase related 2 Neighboring gene erythropoietin receptor Neighboring gene ral guanine nucleotide dissociation stimulator like 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ35119, MGC78620, MGC149562

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATPase activity IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
single-stranded DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single-stranded DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
double-strand break repair via homologous recombination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
double-strand break repair via homologous recombination IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein stabilization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Shu complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Shu complex IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ATPase SWSAP1
Names
SWS1-associated protein 1
ZSWIM7-associated protein 1
zinc finger, SWIM-type containing 7 associated protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_175871.4NP_787067.3  ATPase SWSAP1

    Status: VALIDATED

    Source sequence(s)
    AC024575
    Consensus CDS
    CCDS12259.1
    Related
    ENSP00000501355.1, ENST00000674460.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    11374666..11376169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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