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ZNF440 zinc finger protein 440 [ Homo sapiens (human) ]

Gene ID: 126070, updated on 13-Mar-2020

Summary

Official Symbol
ZNF440provided by HGNC
Official Full Name
zinc finger protein 440provided by HGNC
Primary source
HGNC:HGNC:20874
See related
Ensembl:ENSG00000171295
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in urinary bladder (RPKM 4.7), colon (RPKM 4.5) and 25 other tissues See more
Orthologs

Genomic context

See ZNF440 in Genome Data Viewer
Location:
19p13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (11814273..11835617)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (11925099..11946016)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 441 Neighboring gene zinc finger protein 491 Neighboring gene vomeronasal 2 receptor 13 pseudogene Neighboring gene zinc finger protein 439

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ37933

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152357.3NP_689570.2  zinc finger protein 440

    See identical proteins and their annotated locations for NP_689570.2

    Status: VALIDATED

    Source sequence(s)
    AC008543
    Consensus CDS
    CCDS42503.1
    UniProtKB/Swiss-Prot
    Q8IYI8
    Related
    ENSP00000305373.5, ENST00000304060.10
    Conserved Domains (5) summary
    smart00349
    Location:444
    KRAB; krueppel associated box
    COG5048
    Location:199489
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:370390
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:382407
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    11814273..11835617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005259731.4XP_005259788.1  zinc finger protein 440 isoform X1

    Conserved Domains (5) summary
    smart00349
    Location:747
    KRAB; krueppel associated box
    COG5048
    Location:202492
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:373393
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:746
    KRAB; KRAB box
    pfam13465
    Location:385410
    zf-H2C2_2; Zinc-finger double domain
  2. XM_017026254.1XP_016881743.1  zinc finger protein 440 isoform X2

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