Format

Send to:

Choose Destination

TRAPPC5 trafficking protein particle complex 5 [ Homo sapiens (human) ]

Gene ID: 126003, updated on 5-Apr-2020

Summary

Official Symbol
TRAPPC5provided by HGNC
Official Full Name
trafficking protein particle complex 5provided by HGNC
Primary source
HGNC:HGNC:23067
See related
Ensembl:ENSG00000181029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRS31
Expression
Ubiquitous expression in testis (RPKM 17.0), kidney (RPKM 16.1) and 25 other tissues See more
Orthologs

Genomic context

See TRAPPC5 in Genome Data Viewer
Location:
19p13.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (7680833..7687703)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (7745707..7747748)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene resistin Neighboring gene mast cell expressed membrane protein 1 Neighboring gene Fc fragment of IgE receptor II Neighboring gene uncharacterized LOC105372262

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: MCEMP1

Homology

Clone Names

  • MGC52424

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
COPII vesicle coating TAS
Traceable Author Statement
more info
 
ER to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
TRAPP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
TRAPP complex IDA
Inferred from Direct Assay
more info
PubMed 
TRAPPI protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
TRAPPII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol TAS
Traceable Author Statement
more info
 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
trafficking protein particle complex subunit 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_055288.1 RefSeqGene

    Range
    5001..7042
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001042461.3NP_001035926.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for NP_001035926.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC008763, BC022836, BG528980, BU736689
    Consensus CDS
    CCDS42490.1
    UniProtKB/Swiss-Prot
    Q8IUR0
    Related
    ENSP00000399025.1, ENST00000426877.2
    Conserved Domains (1) summary
    cd14943
    Location:24175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
  2. NM_001042462.2NP_001035927.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for NP_001035927.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC008763, BM841051, BU736689
    Consensus CDS
    CCDS42490.1
    UniProtKB/Swiss-Prot
    Q8IUR0
    Related
    ENSP00000470262.1, ENST00000596148.3
    Conserved Domains (1) summary
    cd14943
    Location:24175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
  3. NM_174894.3NP_777554.1  trafficking protein particle complex subunit 5

    See identical proteins and their annotated locations for NP_777554.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC008763, BC042161, BG528980, BI196928, BU736689
    Consensus CDS
    CCDS42490.1
    UniProtKB/Swiss-Prot
    Q8IUR0
    Related
    ENSP00000316990.4, ENST00000317378.5
    Conserved Domains (1) summary
    cd14943
    Location:24175
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    7680833..7687703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center