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ZNF816 zinc finger protein 816 [ Homo sapiens (human) ]

Gene ID: 125893, updated on 11-Jun-2021

Summary

Official Symbol
ZNF816provided by HGNC
Official Full Name
zinc finger protein 816provided by HGNC
Primary source
HGNC:HGNC:26995
See related
Ensembl:ENSG00000180257
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF816A
Expression
Ubiquitous expression in prostate (RPKM 4.4), urinary bladder (RPKM 4.0) and 25 other tissues See more
Orthologs
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Genomic context

See ZNF816 in Genome Data Viewer
Location:
19q13.41
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (52949385..52962881, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (53452638..53466134, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 320 Neighboring gene zinc finger protein 888 Neighboring gene ZNF816-ZNF321P readthrough Neighboring gene zinc finger protein 321, pseudogene Neighboring gene zinc finger protein 702, pseudogene Neighboring gene uncharacterized LOC105372453 Neighboring gene actin related protein 2/3 complex subunit 1A pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC125619

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 816
Names
zinc finger protein 816A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031665.4NP_001026835.1  zinc finger protein 816

    See identical proteins and their annotated locations for NP_001026835.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AC010487, BC063805, BC105930, DA473052
    Consensus CDS
    CCDS33096.1
    UniProtKB/Swiss-Prot
    Q0VGE8
    UniProtKB/TrEMBL
    A0A024R4J0
    Related
    ENSP00000350295.4, ENST00000357666.8
    Conserved Domains (3) summary
    COG5048
    Location:283650
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287307
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2464
    KRAB; KRAB box
  2. NM_001202456.3NP_001189385.1  zinc finger protein 816

    See identical proteins and their annotated locations for NP_001189385.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AC010487, BC063805, BC105930, DA473052
    Consensus CDS
    CCDS33096.1
    UniProtKB/Swiss-Prot
    Q0VGE8
    UniProtKB/TrEMBL
    A0A024R4J0
    Conserved Domains (3) summary
    COG5048
    Location:283650
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287307
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2464
    KRAB; KRAB box
  3. NM_001202457.3NP_001189386.1  zinc finger protein 816

    See identical proteins and their annotated locations for NP_001189386.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
    Source sequence(s)
    AC010487, BC063805, BC105930, DA473052
    Consensus CDS
    CCDS33096.1
    UniProtKB/Swiss-Prot
    Q0VGE8
    UniProtKB/TrEMBL
    A0A024R4J0
    Related
    ENSP00000403266.2, ENST00000444460.7
    Conserved Domains (3) summary
    COG5048
    Location:283650
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:287307
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:2464
    KRAB; KRAB box

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    52949385..52962881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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