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Cd9 CD9 antigen [ Mus musculus (house mouse) ]

Gene ID: 12527, updated on 23-May-2018
Official Symbol
Cd9provided by MGI
Official Full Name
CD9 antigenprovided by MGI
Primary source
MGI:MGI:88348
See related
Ensembl:ENSMUSG00000030342 Vega:OTTMUSG00000022694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tspan29
Expression
Broad expression in bladder adult (RPKM 275.6), placenta adult (RPKM 192.8) and 24 other tissues See more
Orthologs
See Cd9 in Genome Data Viewer
Location:
6 F3; 6 59.32 cM
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (125460266..125494755, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (125410284..125444773, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily, member 1a Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 6 Neighboring gene predicted gene, 32673 Neighboring gene predicted gene, 38549 Neighboring gene predicted gene, 26728 Neighboring gene predicted gene, 33144

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
integrin binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell adhesion ISO
Inferred from Sequence Orthology
more info
 
cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to low-density lipoprotein particle stimulus IDA
Inferred from Direct Assay
more info
PubMed 
fusion of sperm to egg plasma membrane involved in single fertilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
fusion of sperm to egg plasma membrane involved in single fertilization IDA
Inferred from Direct Assay
more info
PubMed 
fusion of sperm to egg plasma membrane involved in single fertilization ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell proliferation IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of cellular component movement ISO
Inferred from Sequence Orthology
more info
 
negative regulation of platelet aggregation ISO
Inferred from Sequence Orthology
more info
 
paranodal junction assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
paranodal junction assembly IDA
Inferred from Direct Assay
more info
PubMed 
receptor internalization IDA
Inferred from Direct Assay
more info
PubMed 
single fertilization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
apical plasma membrane ISO
Inferred from Sequence Orthology
more info
 
cell surface ISO
Inferred from Sequence Orthology
more info
 
external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane TAS
Traceable Author Statement
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007657.4NP_031683.1  CD9 antigen

    See identical proteins and their annotated locations for NP_031683.1

    Status: VALIDATED

    Source sequence(s)
    AK002251, BC070474
    Consensus CDS
    CCDS20551.1
    UniProtKB/Swiss-Prot
    P40240
    Related
    ENSMUSP00000032492.8, OTTMUSP00000025977, ENSMUST00000032492.8
    Conserved Domains (2) summary
    cd03152
    Location:109191
    CD9_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans ...
    pfam00335
    Location:9219
    Tetraspannin; Tetraspanin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    125460266..125494755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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