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Cd69 CD69 antigen [ Mus musculus (house mouse) ]

Gene ID: 12515, updated on 12-Sep-2021

Summary

Official Symbol
Cd69provided by MGI
Official Full Name
CD69 antigenprovided by MGI
Primary source
MGI:MGI:88343
See related
Ensembl:ENSMUSG00000030156
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
A; V; AIM; VEA; AI452015; 5830438K24Rik
Expression
Biased expression in thymus adult (RPKM 3.8), spleen adult (RPKM 1.1) and 6 other tissues See more
Orthologs
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Genomic context

See Cd69 in Genome Data Viewer
Location:
6 F3; 6 63.21 cM
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129244287..129252332, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129267324..129275375, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (129217343..129225387, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38906 Neighboring gene RIKEN cDNA 2310001H17 gene Neighboring gene C-type lectin domain family 2, member m Neighboring gene C-type lectin domain family 12, member a

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables calcium ion binding ISO
Inferred from Sequence Orthology
more info
 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
early activation antigen CD69
Names
Very Early Activation Antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033122.4NP_001028294.1  early activation antigen CD69

    See identical proteins and their annotated locations for NP_001028294.1

    Status: VALIDATED

    Source sequence(s)
    AK151076, BE691115, BY193860
    Consensus CDS
    CCDS20582.1
    UniProtKB/Swiss-Prot
    P37217
    UniProtKB/TrEMBL
    Q3U6A8
    Related
    ENSMUSP00000032259.4, ENSMUST00000032259.6
    Conserved Domains (2) summary
    cd03593
    Location:85196
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    PHA03097
    Location:43197
    PHA03097; C-type lectin-like protein; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    129244287..129252332 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505463.3XP_006505526.1  early activation antigen CD69 isoform X1

    Conserved Domains (1) summary
    cd03593
    Location:72183
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
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