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SNHG29 small nucleolar RNA host gene 29 [ Homo sapiens (human) ]

Gene ID: 125144, updated on 19-Jul-2022

Summary

Official Symbol
SNHG29provided by HGNC
Official Full Name
small nucleolar RNA host gene 29provided by HGNC
Primary source
HGNC:HGNC:28619
See related
Ensembl:ENSG00000175061 AllianceGenome:HGNC:28619
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TSAP19; C17orf45; NCRNA00188; FAM211A-AS1; LRRC75A-AS1; C17orf76-AS1
Expression
Ubiquitous expression in bone marrow (RPKM 110.6), thyroid (RPKM 105.4) and 25 other tissues See more
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Genomic context

See SNHG29 in Genome Data Viewer
Location:
17p11.2
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (16438987..16470648)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (16341290..16372939)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16342301..16373962)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene transient receptor potential cation channel subfamily V member 2 Neighboring gene small nucleolar RNA, C/D box 49B Neighboring gene small nucleolar RNA, C/D box 49A Neighboring gene small nucleolar RNA, C/D box 65 Neighboring gene leucine rich repeat containing 75A Neighboring gene uncharacterized LOC124903936 Neighboring gene uncharacterized LOC124903940

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • C17orf76 antisense RNA 1 (non-protein coding)
  • FAM211A antisense RNA 1
  • LRRC75A antisense RNA 1

Clone Names

  • FLJ25777, MGC40157

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027158.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal segment and two exons, compared to variant 6.
    Source sequence(s)
    AC093484, CN297624
    Related
    ENST00000580180.6
  2. NR_027159.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, BC027986, CF126952
    Related
    ENST00000655540.1
  3. NR_027160.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an internal segment in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, BC027986
  4. NR_027161.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, BC027986, BQ954204
    Related
    ENST00000581913.5
  5. NR_027162.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) represents the longest transcript.
    Source sequence(s)
    AC093484, AK307982
  6. NR_027163.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks an internal segment in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, BU599615
    Related
    ENST00000660020.1
  7. NR_027164.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks two internal segments in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, CB150672
    Related
    ENST00000667979.2
  8. NR_027165.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) lacks two internal segments in the 5' region and an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, BP870476
    Related
    ENST00000666215.2
  9. NR_027166.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) lacks an internal segment and an exon in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, CD050014
    Related
    ENST00000663781.2
  10. NR_027167.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (11) lacks two internal segments in the 5' region and an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, AK309961
    Related
    ENST00000483140.7
  11. NR_027168.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (12) lacks an internal segment in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, BU506593
    Related
    ENST00000487066.6
  12. NR_027169.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13) lacks an internal segment in the 5' region and an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, BP353162
    Related
    ENST00000654778.1
  13. NR_027170.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (14) lacks two internal segments in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484
    Related
    ENST00000481898.6
  14. NR_027171.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (15) lacks an exon in the 5' region, lacks an exon in the 3' region, and has an alternate 3' exon, compared to variant 6.
    Source sequence(s)
    AC093484, BC027986, DA494627, DA793334
  15. NR_027172.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (16) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has an alternate 3' exon, compared to variant 6.
    Source sequence(s)
    AC127540, DA193585
  16. NR_027173.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (17) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has multiple alternate 3' exons, compared to variant 6.
    Source sequence(s)
    AC093484, DA793334, DA857697
  17. NR_027174.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (18) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has multiple alternate 3' exons, compared to variant 6.
    Source sequence(s)
    AC093484, DA793334, DA802938
  18. NR_027175.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (19) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has an alternate 3' exon, compared to variant 6.
    Source sequence(s)
    AC093484, DA485648
  19. NR_027176.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (20) lacks an internal segment and an exon in the 5' region, lacks two exons in the 3' region, and has multiple alternate 3' exons, compared to variant 6.
    Source sequence(s)
    AC093484, AK308482, DA793334
  20. NR_027177.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (21) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has multiple alternate 3' exons, compared to variant 6.
    Source sequence(s)
    AC093484, DA383448, DA793334
  21. NR_027178.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (22) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has multiple alternate 3' exons, compared to variant 6.
    Source sequence(s)
    AC093484, DA131201, DA793334
  22. NR_027179.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (23) lacks an exon and has an alternate segment in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, DA867958, DW409012
  23. NR_027667.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an internal segment in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, AK307982, BC027986
    Related
    ENST00000475953.6
  24. NR_045021.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (24) lacks an internal segment and an exon in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, AK098643, CD389053
    Related
    ENST00000582911.6
  25. NR_045022.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (25) lacks two internal segments and has an alternate segment in the 5' region, compared to variant 6.
    Source sequence(s)
    AC093484, DA440445
  26. NR_045023.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (26) lacks an internal segment and an exon in the 5' region, lacks an exon in the 3' region, and has an alternate 3' exon, compared to variant 6.
    Source sequence(s)
    AC093484, AC127540, DA769571
  27. NR_045024.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (27) lacks an exon in the 5' region and lacks an exon and has an alternate segment in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, DB258221
    Related
    ENST00000584141.5
  28. NR_045025.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (28) lacks an internal segment and an exon in the 5' region and lacks an exon and has an alternate segment in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, DA793334
  29. NR_045026.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (29) lacks an internal segment in the 5' region and lacks an exon and has an alternate segment in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, DA867958
  30. NR_045027.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (30) lacks an exon in the 5' region and an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, BU165462
    Related
    ENST00000470491.7
  31. NR_045028.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (31) lacks an internal segment in the 5' region and lacks an exon in the 3' region, compared to variant 6.
    Source sequence(s)
    AC093484, BI333700
  32. NR_045029.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (32) lacks an internal segment and an exon in the 5' region and has an alternate segement, compared to variant 6.
    Source sequence(s)
    AC093484, BQ070126
    Related
    ENST00000477249.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    16438987..16470648
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    16341290..16372939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152350.3: Suppressed sequence

    Description
    NM_152350.3: This RefSeq was permanently suppressed because the gene is not considered to be protein-coding.