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CHCT1 CHD1 helical C-terminal domain containing 1 [ Homo sapiens (human) ]

Gene ID: 124773, updated on 24-Dec-2022

Summary

Official Symbol
CHCT1provided by HGNC
Official Full Name
CHD1 helical C-terminal domain containing 1provided by HGNC
Primary source
HGNC:HGNC:26990
See related
Ensembl:ENSG00000141371 AllianceGenome:HGNC:26990
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C17orf64
Expression
Restricted expression toward testis (RPKM 29.9) See more
Orthologs
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Genomic context

See CHCT1 in Genome Data Viewer
Location:
17q23.2
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (60421214..60431426)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (61291426..61300355)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (58499850..58508787)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 32 Neighboring gene H3 histone pseudogene 42 Neighboring gene uncharacterized LOC105371850 Neighboring gene ribosomal protein L12 pseudogene 38 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 42

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
CHD1 helical C-terminal domain containing protein 1; uncharacterized protein C17orf64

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_181707.3NP_859058.2  CHD1 helical C-terminal domain containing protein 1

    See identical proteins and their annotated locations for NP_859058.2

    Status: VALIDATED

    Source sequence(s)
    AC037475, BC036356, CD742737, DB448877
    Consensus CDS
    CCDS32698.2
    UniProtKB/Swiss-Prot
    Q86WR6, Q8IY87
    Related
    ENSP00000269127.4, ENST00000269127.5
    Conserved Domains (1) summary
    pfam13907
    Location:52132
    DUF4208; Domain of unknown function (DUF4208)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    60421214..60431426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005257033.6XP_005257090.1  uncharacterized protein C17orf64 isoform X1

    Conserved Domains (1) summary
    pfam13907
    Location:85165
    DUF4208; Domain of unknown function (DUF4208)
  2. XM_005257034.6XP_005257091.1  uncharacterized protein C17orf64 isoform X2

    Conserved Domains (1) summary
    pfam13907
    Location:85165
    DUF4208; Domain of unknown function (DUF4208)
  3. XM_005257035.5XP_005257092.1  uncharacterized protein C17orf64 isoform X4

    Conserved Domains (1) summary
    pfam13907
    Location:1595
    DUF4208; Domain of unknown function (DUF4208)
  4. XM_017024166.3XP_016879655.1  uncharacterized protein C17orf64 isoform X5

    Conserved Domains (1) summary
    pfam13907
    Location:1595
    DUF4208; Domain of unknown function (DUF4208)
  5. XM_005257036.3XP_005257093.1  uncharacterized protein C17orf64 isoform X3

    Conserved Domains (1) summary
    pfam13907
    Location:52132
    DUF4208; Domain of unknown function (DUF4208)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    61291426..61300355
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)