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Ccnd2 cyclin D2 [ Mus musculus (house mouse) ]

Gene ID: 12444, updated on 27-Feb-2024

Summary

Official Symbol
Ccnd2provided by MGI
Official Full Name
cyclin D2provided by MGI
Primary source
MGI:MGI:88314
See related
Ensembl:ENSMUSG00000000184 AllianceGenome:MGI:88314
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
cD2; Vin1; Vin-1; 2600016F06Rik
Summary
Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity and protein kinase binding activity. Acts upstream of or within several processes, including adult locomotory behavior; cellular response to X-ray; and long-term memory. Located in cytoplasm and nucleus. Part of cyclin D2-CDK4 complex. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in ductal carcinoma in situ; invasive lobular carcinoma; prostate cancer; and transitional cell carcinoma. Orthologous to human CCND2 (cyclin D2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 77.3), limb E14.5 (RPKM 41.5) and 22 other tissues See more
Orthologs
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Genomic context

See Ccnd2 in Genome Data Viewer
Location:
6 F3; 6 61.92 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (127102125..127131913, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (127125162..127152188, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 23 Neighboring gene Trp53 induced glycolysis regulatory phosphatase Neighboring gene STARR-seq mESC enhancer starr_17405 Neighboring gene STARR-positive B cell enhancer ABC_E2208 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:127059715-127059898 Neighboring gene STARR-seq mESC enhancer starr_17406 Neighboring gene STARR-positive B cell enhancer ABC_E2805 Neighboring gene RIKEN cDNA 9330179D12 gene Neighboring gene STARR-positive B cell enhancer ABC_E9676 Neighboring gene STARR-seq mESC enhancer starr_17407 Neighboring gene eukaryotic translation elongation factor 1 gamma pseudogene Neighboring gene triosephosphate isomerase related sequence 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase activator activity ISO
Inferred from Sequence Orthology
more info
 
enables cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in G1/S transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in G1/S transition of mitotic cell cycle NAS
Non-traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within adult locomotory behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cell cycle IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within cellular response to X-ray IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within long-term memory IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cardiac muscle cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of G1/S transition of mitotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of G1/S transition of mitotic cell cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cardiac muscle cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein phosphorylation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within regulation of cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of chromatin ISO
Inferred from Sequence Orthology
more info
 
part_of cyclin D2-CDK4 complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of cyclin D2-CDK4 complex ISO
Inferred from Sequence Orthology
more info
 
part_of cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of cyclin-dependent protein kinase holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in nuclear membrane ISO
Inferred from Sequence Orthology
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009829.3NP_033959.1  G1/S-specific cyclin-D2

    See identical proteins and their annotated locations for NP_033959.1

    Status: VALIDATED

    Source sequence(s)
    AK147345, BY161742, CAAA01200960
    Consensus CDS
    CCDS20564.1
    UniProtKB/Swiss-Prot
    P30280
    UniProtKB/TrEMBL
    Q4FK45
    Related
    ENSMUSP00000000188.9, ENSMUST00000000188.12
    Conserved Domains (2) summary
    pfam00134
    Location:24151
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:153262
    Cyclin_C; Cyclin, C-terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    127102125..127131913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165787.1XP_036021680.1  G1/S-specific cyclin-D2 isoform X2

    Conserved Domains (2) summary
    cd20574
    Location:48196
    CYCLIN_CCND2_rpt1; first cyclin box found in G1/S-specific cyclin-D2 (CCND2)
    cd20577
    Location:201305
    CYCLIN_CCND2_rpt2; second cyclin box found in G1/S-specific cyclin-D2 (CCND2)
  2. XM_036165785.1XP_036021678.1  G1/S-specific cyclin-D2 isoform X1

    Conserved Domains (2) summary
    cd20574
    Location:61209
    CYCLIN_CCND2_rpt1; first cyclin box found in G1/S-specific cyclin-D2 (CCND2)
    cd20577
    Location:214318
    CYCLIN_CCND2_rpt2; second cyclin box found in G1/S-specific cyclin-D2 (CCND2)
  3. XM_036165786.1XP_036021679.1  G1/S-specific cyclin-D2 isoform X2

  4. XM_006505460.1XP_006505523.1  G1/S-specific cyclin-D2 isoform X3

    See identical proteins and their annotated locations for XP_006505523.1

    UniProtKB/Swiss-Prot
    P30280
    UniProtKB/TrEMBL
    Q4FK45
    Conserved Domains (2) summary
    pfam00134
    Location:24151
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:153262
    Cyclin_C; Cyclin, C-terminal domain
  5. XM_006505459.3XP_006505522.1  G1/S-specific cyclin-D2 isoform X3

    See identical proteins and their annotated locations for XP_006505522.1

    UniProtKB/Swiss-Prot
    P30280
    UniProtKB/TrEMBL
    Q4FK45
    Conserved Domains (2) summary
    pfam00134
    Location:24151
    Cyclin_N; Cyclin, N-terminal domain
    pfam02984
    Location:153262
    Cyclin_C; Cyclin, C-terminal domain
  6. XM_036165788.1XP_036021681.1  G1/S-specific cyclin-D2 isoform X4

  7. XM_036165789.1XP_036021682.1  G1/S-specific cyclin-D2 isoform X5