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C16orf78 chromosome 16 open reading frame 78 [ Homo sapiens (human) ]

Gene ID: 123970, updated on 5-Jan-2022

Summary

Official Symbol
C16orf78provided by HGNC
Official Full Name
chromosome 16 open reading frame 78provided by HGNC
Primary source
HGNC:HGNC:28479
See related
Ensembl:ENSG00000166152
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Restricted expression toward testis (RPKM 18.9) See more
Orthologs
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Genomic context

See C16orf78 in Genome Data Viewer
Location:
16q12.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (49373804..49399431)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (49407715..49433342)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371243 Neighboring gene Sharpr-MPRA regulatory region 1482 Neighboring gene uncharacterized LOC105371244 Neighboring gene uncharacterized LOC105371245 Neighboring gene long intergenic non-protein coding RNA 2179

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC33367

General protein information

Preferred Names
uncharacterized protein C16orf78

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144602.4NP_653203.1  uncharacterized protein C16orf78

    See identical proteins and their annotated locations for NP_653203.1

    Status: VALIDATED

    Source sequence(s)
    AC007614, AI478870, BC021181, HY001804
    Consensus CDS
    CCDS10738.1
    UniProtKB/Swiss-Prot
    Q8WTQ4
    Related
    ENSP00000299191.3, ENST00000299191.4
    Conserved Domains (1) summary
    pfam15472
    Location:1264
    DUF4638; Domain of unknown function (DUF4638)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    49373804..49399431
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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