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CMTM3 CKLF like MARVEL transmembrane domain containing 3 [ Homo sapiens (human) ]

Gene ID: 123920, updated on 1-Jun-2020

Summary

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Official Symbol
CMTM3provided by HGNC
Official Full Name
CKLF like MARVEL transmembrane domain containing 3provided by HGNC
Primary source
HGNC:HGNC:19174
See related
Ensembl:ENSG00000140931 MIM:607886
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BNAS2; CKLFSF3
Summary
This gene belongs to the chemokine-like factor gene superfamily, a novel family that is similar to the chemokine and the transmembrane 4 superfamilies of signaling molecules. This gene is one of several chemokine-like factor genes located in a cluster on chromosome 16. Alternatively spliced transcript variants containing different 5' UTRs, but encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]
Expression
Broad expression in testis (RPKM 24.7), placenta (RPKM 16.7) and 24 other tissues See more
Orthologs
mouse all

Genomic context

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See CMTM3 in Genome Data Viewer
Location:
16q22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (66603996..66613892)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (66637935..66647795)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene CKLF-CMTM1 readthrough Neighboring gene CKLF like MARVEL transmembrane domain containing 1 Neighboring gene CKLF like MARVEL transmembrane domain containing 2 Neighboring gene CKLF like MARVEL transmembrane domain containing 4 Neighboring gene putative uncharacterized protein encoded by LINC00269 Neighboring gene dynein cytoplasmic 1 light intermediate chain 2 Neighboring gene uncharacterized LOC106699570

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. CKLF-Like MARVEL Transmembrane Domain-Containing Member 3 (CMTM3) Inhibits the Proliferation and Tumorigenisis in Hepatocellular Carcinoma Cells. Li W, et al. Oncol Res, 2017 Jan 26. PMID 27629543
  2. Elevated methylation of CMTM3 promoter in the male laryngeal squamous cell carcinoma patients. Shen Z, et al. Clin Biochem, 2016 Nov. PMID 27521994
  3. CMTM3 presents a secreted form released via exosomes. Liu B, et al. Acta Biochim Biophys Sin (Shanghai), 2016 Jun. PMID 27125975, Free PMC Article
  4. Knockdown of CMTM3 promotes metastasis of gastric cancer via the STAT3/Twist1/EMT signaling pathway. Yuan W, et al. Oncotarget, 2016 May 17. PMID 27121055, Free PMC Article
  5. CMTM3 is reduced in prostate cancer and inhibits migration, invasion and growth of LNCaP cells. Hu F, et al. Clin Transl Oncol, 2015 Aug. PMID 25990505

See all (29) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CMTM3 exhibited a lower expression pattern in gastric cancer tissues.MiR-135b-5p promotes gastric cancer progression by targeting CMTM3.
    Title: miR-135b-5p promotes gastric cancer progression by targeting CMTM3.
  2. this study demonstrates that knockdown of CMTM3 promotes the metastasis of gastric cancer through the STAT3/Twist1/EMT pathway
    Title: Knockdown of CMTM3 promotes metastasis of gastric cancer via the STAT3/Twist1/EMT signaling pathway.
  3. CMTM3 was significantly hypermethylated in colorectal cancer tissues when compared with adjacent normal colorectal tissues.
    Title: DNA methylation of CMTM3, SSTR2, and MDFI genes in colorectal cancer.
  4. CMTM3 decreases EGFR expression, facilitates EGFR degradation, and inhibits the EGF-mediated tumorigenicity of gastric cancer cells by enhancing Rab5 activity.
    Title: CMTM3 decreases EGFR expression and EGF-mediated tumorigenicity by promoting Rab5 activity in gastric cancer.
  5. CMTM3 mediates cell-cell adhesion at adherens junctions and contributes to the control of vascular sprouting by regulation VE-cadherin turnover.
    Title: CMTM3 (CKLF-Like Marvel Transmembrane Domain 3) Mediates Angiogenesis by Regulating Cell Surface Availability of VE-Cadherin in Endothelial Adherens Junctions.
  6. Overexpression of CMTM3 attenuated the tumor growth of hepatocellular carcinoma.
    Title: CKLF-Like MARVEL Transmembrane Domain-Containing Member 3 (CMTM3) Inhibits the Proliferation and Tumorigenisis in Hepatocellular Carcinoma Cells.
  7. identified CMTM3 as a novel secretory protein released via exosomes in the prostate
    Title: CMTM3 presents a secreted form released via exosomes.
  8. study indicates that elevated CMTM3 methylation is a risk factor in male LSCC patients, especially in the patients with age over 55years and with smoking behavior
    Title: Elevated methylation of CMTM3 promoter in the male laryngeal squamous cell carcinoma patients.
  9. Reduced expression of CMTM3 is associated with prostate cancer.
    Title: CMTM3 is reduced in prostate cancer and inhibits migration, invasion and growth of LNCaP cells.
  10. CMTM1 and 3 are priority targets in glioblastomas. First insights into signalling of these two genes that might be conveyed by growth factor receptor, Src family kinase and WNT activation was presented.
    Title: Systematic investigation of CMTM family genes suggests relevance to glioblastoma pathogenesis and CMTM1 and CMTM3 as priority targets.
Submit: New GeneRIF Correction See all GeneRIFs (16)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ31762, MGC51956

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cytokine activity IEA
Inferred from Electronic Annotation
more info
  
protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
blastocyst hatching IEA
Inferred from Electronic Annotation
more info
  
chemotaxis IEA
Inferred from Electronic Annotation
more info
  
positive regulation of B cell receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
 PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
extracellular space IEA
Inferred from Electronic Annotation
more info
  
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
 PubMed 
nuclear membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CKLF-like MARVEL transmembrane domain-containing protein 3
Names
chemokine-like factor superfamily member 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363918.1 → NP_001350847.1  CKLF-like MARVEL transmembrane domain-containing protein 3

    Status: REVIEWED

    Source sequence(s)
    AC018557
    Consensus CDS
    CCDS10815.1
    Related
    ENSP00000455758.1, ENST00000562707.5
    Conserved Domains (1) summary
    pfam01284
    Location:36 → 149
    MARVEL; Membrane-associating domain

  2. NM_001363923.1 → NP_001350852.1  CKLF-like MARVEL transmembrane domain-containing protein 3

    Status: REVIEWED

    Source sequence(s)
    AC018557, AF479813, AK056324
    Related
    ENSP00000400482.2, ENST00000424011.6
    Conserved Domains (1) summary
    pfam01284
    Location:36 → 149
    MARVEL; Membrane-associating domain

  3. NM_144601.4 → NP_653202.1  CKLF-like MARVEL transmembrane domain-containing protein 3

    See identical proteins and their annotated locations for NP_653202.1

    Status: REVIEWED

    Source sequence(s)
    AC018557, AF479813
    Consensus CDS
    CCDS10815.1
    UniProtKB/Swiss-Prot
    Q96MX0
    UniProtKB/TrEMBL
    A0A024R6Y8
    Related
    ENSP00000354579.4, ENST00000361909.8
    Conserved Domains (1) summary
    pfam01284
    Location:36 → 149
    MARVEL; Membrane-associating domain

  4. NM_181553.4 → NP_853531.1  CKLF-like MARVEL transmembrane domain-containing protein 3

    See identical proteins and their annotated locations for NP_853531.1

    Status: REVIEWED

    Source sequence(s)
    AF479813, BC047701
    Consensus CDS
    CCDS10815.1
    UniProtKB/Swiss-Prot
    Q96MX0
    UniProtKB/TrEMBL
    A0A024R6Y8
    Related
    ENSP00000455851.1, ENST00000567572.6
    Conserved Domains (1) summary
    pfam01284
    Location:36 → 149
    MARVEL; Membrane-associating domain

RNA

  1. NR_037619.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC018557, AF479813, CT001840
    Related
    ENST00000566756.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    66603996..66613892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011522861.1 → XP_011521163.1  CKLF-like MARVEL transmembrane domain-containing protein 3 isoform X1

    UniProtKB/TrEMBL
    H3BUD5
    Related
    ENSP00000457589.1, ENST00000564060.5

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001048251.1: Suppressed sequence

    Description
    NM_001048251.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.

  2. NM_181554.1: Suppressed sequence

    Description
    NM_181554.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  3. NM_181555.1: Suppressed sequence

    Description
    NM_181555.1: This RefSeq was permanently suppressed because currently there is not sufficient data to support this transcript variant.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96MX0.1 GenPept UniProtKB/Swiss-Prot:Q96MX0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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