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Calcr calcitonin receptor [ Mus musculus (house mouse) ]

Gene ID: 12311, updated on 18-Apr-2024

Summary

Official Symbol
Calcrprovided by MGI
Official Full Name
calcitonin receptorprovided by MGI
Primary source
MGI:MGI:101950
See related
Ensembl:ENSMUSG00000023964 AllianceGenome:MGI:101950
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Clr; Ct-r
Summary
Enables calcitonin receptor activity. Acts upstream of or within several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; negative regulation of ossification; and osteoclast differentiation. Located in acrosomal vesicle and cilium. Is expressed in several structures, including brain; gonad; limb long bone; mammary gland primordium; and sensory organ. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in whole brain E14.5 (RPKM 1.5), CNS E18 (RPKM 1.2) and 5 other tissues See more
Orthologs
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Genomic context

Location:
6 A1; 6 1.81 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (3685678..3764713, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (3685678..3764713, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene VPS50 EARP/GARPII complex subunit Neighboring gene predicted gene, 52885 Neighboring gene STARR-seq mESC enhancer starr_14998 Neighboring gene STARR-seq mESC enhancer starr_14999 Neighboring gene STARR-seq mESC enhancer starr_15001 Neighboring gene STARR-seq mESC enhancer starr_15002 Neighboring gene predicted gene, 53306 Neighboring gene microRNA 653 Neighboring gene microRNA 489 Neighboring gene predicted gene, 33576 Neighboring gene STARR-seq mESC enhancer starr_15003 Neighboring gene STARR-seq mESC enhancer starr_15005 Neighboring gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin) pseudogene Neighboring gene STARR-seq mESC enhancer starr_15006 Neighboring gene tissue factor pathway inhibitor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (9)  1 citation
  • Endonuclease-mediated (6) 

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables amylin receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables amyloid-beta binding ISO
Inferred from Sequence Orthology
more info
 
enables calcitonin binding ISO
Inferred from Sequence Orthology
more info
 
enables calcitonin gene-related peptide receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables calcitonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables calcitonin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables calcitonin receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within adenylate cyclase-activating G protein-coupled receptor signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in adenylate cyclase-activating G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in adenylate cyclase-modulating G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in amylin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in cell surface receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in cross-receptor inhibition within G protein-coupled receptor heterodimer ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within negative regulation of ossification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of ossification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within osteoclast differentiation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of adenylate cyclase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of calcium-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within positive regulation of cytosolic calcium ion concentration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cytosolic calcium ion concentration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein kinase A signaling ISO
Inferred from Sequence Orthology
more info
 
NOT acts_upstream_of_or_within regulation of bone resorption IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of mRNA stability IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to amyloid-beta ISO
Inferred from Sequence Orthology
more info
 
involved_in response to glucocorticoid ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in acrosomal vesicle IDA
Inferred from Direct Assay
more info
PubMed 
part_of amylin receptor complex 1 ISO
Inferred from Sequence Orthology
more info
 
part_of amylin receptor complex 2 ISO
Inferred from Sequence Orthology
more info
 
part_of amylin receptor complex 3 ISO
Inferred from Sequence Orthology
more info
 
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in axon ISO
Inferred from Sequence Orthology
more info
 
located_in cilium IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042725.1NP_001036190.1  calcitonin receptor isoform 1a precursor

    See identical proteins and their annotated locations for NP_001036190.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1a, previously called b), differs in the 5' UTR and lacks an alternate in-frame exon compared to variant 1b. The resulting isoform (1a, previously called b), has the same N- and C-termini but is shorter compared to isoform 1b.
    Source sequence(s)
    AC066688, AK133983
    Consensus CDS
    CCDS39416.1
    UniProtKB/TrEMBL
    Q924D6
    Related
    ENSMUSP00000130083.2, ENSMUST00000171613.8
    Conserved Domains (2) summary
    pfam02793
    Location:86154
    HRM; Hormone receptor domain
    cd15274
    Location:162425
    7tmB1_calcitonin_R; calcitonin receptor, member of the class B family of seven-transmembrane G protein-coupled receptors
  2. NM_001355192.1NP_001342121.1  calcitonin receptor isoform 1a precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1b. The resulting isoform (1a), has the same N- and C-termini but is shorter compared to isoform 1b. Variants 1a and 3 encode the same protein (isoform 1a).
    Source sequence(s)
    AK133983, AK138275, AK162391
    Consensus CDS
    CCDS39416.1
    UniProtKB/TrEMBL
    Q924D6
    Related
    ENSMUSP00000111285.2, ENSMUST00000115622.8
    Conserved Domains (2) summary
    pfam02793
    Location:86154
    HRM; Hormone receptor domain
    cd15274
    Location:162425
    7tmB1_calcitonin_R; calcitonin receptor, member of the class B family of seven-transmembrane G protein-coupled receptors
  3. NM_001377018.1NP_001363947.1  calcitonin receptor isoform 1b precursor

    Status: VALIDATED

    Source sequence(s)
    AC066688, AC161368
    UniProtKB/Swiss-Prot
    F6X7J4, Q3UUL9, Q60755, Q8CAB0
    UniProtKB/TrEMBL
    Q924D7
    Related
    ENSMUSP00000132124.3, ENSMUST00000170266.3
    Conserved Domains (2) summary
    cd15274
    Location:162472
    7tmB1_calcitonin_R; calcitonin receptor, member of the class B family of seven-transmembrane G protein-coupled receptors
    pfam02793
    Location:86154
    HRM; Hormone receptor domain
  4. NM_007588.2NP_031614.2  calcitonin receptor isoform 1b precursor

    See identical proteins and their annotated locations for NP_031614.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1b), previously called a, represents the longer variant and encodes the longer isoform (1b, previously called a).
    Source sequence(s)
    AC066688, AK162391, CJ057218
    Consensus CDS
    CCDS39417.1
    UniProtKB/Swiss-Prot
    F6X7J4, Q3UUL9, Q60755, Q8CAB0
    UniProtKB/TrEMBL
    Q924D7
    Related
    ENSMUSP00000075070.7, ENSMUST00000075644.13
    Conserved Domains (2) summary
    cd15274
    Location:162472
    7tmB1_calcitonin_R; calcitonin receptor, member of the class B family of seven-transmembrane G protein-coupled receptors
    pfam02793
    Location:86154
    HRM; Hormone receptor domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    3685678..3764713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)