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TEX29 testis expressed 29 [ Homo sapiens (human) ]

Gene ID: 121793, updated on 22-Sep-2022

Summary

Official Symbol
TEX29provided by HGNC
Official Full Name
testis expressed 29provided by HGNC
Primary source
HGNC:HGNC:20370
See related
Ensembl:ENSG00000153495 AllianceGenome:HGNC:20370
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf16; bA474D23.1
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis (RPKM 4.7) and brain (RPKM 0.3) See more
Orthologs
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Genomic context

See TEX29 in Genome Data Viewer
Location:
13q34
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (111316185..111344248)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (110545648..110575278)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (111968532..111996595)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101060553 Neighboring gene Rho guanine nucleotide exchange factor 7 Neighboring gene ARHGEF7 antisense RNA 1 Neighboring gene spalt like transcription factor 4 pseudogene 4 Neighboring gene uncharacterized LOC105370365 Neighboring gene uncharacterized LOC107984618 Neighboring gene VISTA enhancer hs1246 Neighboring gene long intergenic non-protein coding RNA 2337

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC35169

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
testis-expressed protein 29
Names
testis-expressed sequence 29 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001303133.1NP_001290062.1  testis-expressed protein 29 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL160395, AW957098, BC029889, HY035354
    UniProtKB/Swiss-Prot
    Q8N6K0
    Conserved Domains (1) summary
    pfam15839
    Location:80111
    TEX29; Testis-expressed sequence 29 protein
  2. NM_152324.3NP_689537.1  testis-expressed protein 29 isoform 2

    See identical proteins and their annotated locations for NP_689537.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an alternate internal coding exon compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AL160395, BC029889, HY035354
    Consensus CDS
    CCDS9522.1
    UniProtKB/Swiss-Prot
    Q8N6K0
    Related
    ENSP00000283547.1, ENST00000283547.2
    Conserved Domains (1) summary
    pfam15839
    Location:1388
    TEX29; Testis-expressed sequence 29 protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    111316185..111344248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017020387.2XP_016875876.2  testis-expressed protein 29 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    110545648..110575278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)