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CBR4-DT CBR4 divergent transcript [ Homo sapiens (human) ]

Gene ID: 121009646, updated on 28-Oct-2024

Summary

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Official Symbol
CBR4-DTprovided by HGNC
Official Full Name
CBR4 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55540
See related
AllianceGenome:HGNC:55540
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CBR4-DT in Genome Data Viewer
Location:
4q32.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (169010429..169011060)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (172369855..172370486)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (169931580..169932211)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene carbonyl reductase 4 Neighboring gene uncharacterized LOC107986200 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:169915462-169916268 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:169916269-169917074 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:169930407-169931356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22128 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:169937297-169937797 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr4:169938862-169939362 Neighboring gene RNY4 pseudogene 17 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:169954994-169956193 Neighboring gene uncharacterized LOC105377527 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:169991001-169991955 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:169995185-169995684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22129 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22130 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22131 Neighboring gene SH3 domain containing ring finger 1 Neighboring gene ribosomal protein L6 pseudogene 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_185919.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC021151

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    169010429..169011060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    172369855..172370486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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