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Bcl6b B cell CLL/lymphoma 6, member B [ Mus musculus (house mouse) ]

Gene ID: 12029, updated on 8-Dec-2018

Summary

Official Symbol
Bcl6bprovided by MGI
Official Full Name
B cell CLL/lymphoma 6, member Bprovided by MGI
Primary source
MGI:MGI:1278332
See related
Ensembl:ENSMUSG00000000317
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bazf
Expression
Broad expression in lung adult (RPKM 7.9), subcutaneous fat pad adult (RPKM 6.5) and 24 other tissues See more
Orthologs

Genomic context

See Bcl6b in Genome Data Viewer
Location:
11; 11 B3
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (70224127..70229798, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (70037629..70043300, complement)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 11 Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 13 Neighboring gene microRNA 497b Neighboring gene microRNA 195a Neighboring gene microRNA 497

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
DNA-binding transcription repressor activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
B-cell CLL/lymphoma 6 member B protein
Names
BcL6-associated zinc finger protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_007528.3NP_031554.1  B-cell CLL/lymphoma 6 member B protein

    See identical proteins and their annotated locations for NP_031554.1

    Status: VALIDATED

    Source sequence(s)
    AL669869, BC090998, BY730334
    Consensus CDS
    CCDS24939.1
    UniProtKB/Swiss-Prot
    O88282
    UniProtKB/TrEMBL
    Q5BKP3
    Related
    ENSMUSP00000000326.5, ENSMUST00000000326.11
    Conserved Domains (4) summary
    smart00225
    Location:39131
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:325345
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:28132
    BTB; BTB/POZ domain
    pfam13465
    Location:365390
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    70224127..70229798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    328634..334305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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