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Atp5pf ATP synthase peripheral stalk subunit F6 [ Mus musculus (house mouse) ]

Gene ID: 11957, updated on 5-Apr-2024

Summary

Official Symbol
Atp5pfprovided by MGI
Official Full Name
ATP synthase peripheral stalk subunit F6provided by MGI
Primary source
MGI:MGI:107777
See related
Ensembl:ENSMUSG00000022890 AllianceGenome:MGI:107777
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CF6; Atp5j
Summary
The protein encoded by this gene is a component of mitochondrial adenosine triphosphate synthase, which catalyzes the conversion of ATP from ADP. Mitochondrial adenosine triphosphate synthase consists of extrinsic and intrinsic membrane domains that are joined by a stalk. The protein encoded by this gene is a subunit of the stalk domain. A bi-directional promoter that drives expression of this gene has been has been identified. Pseudogenes of this gene are found on chromosomes 14 and 17. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Oct 2014]
Expression
Ubiquitous expression in heart adult (RPKM 199.5), kidney adult (RPKM 107.4) and 28 other tissues See more
Orthologs
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Genomic context

See Atp5pf in Genome Data Viewer
Location:
16 C3.3; 16 46.92 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (84624754..84632495, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (84827871..84835857, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_41365 Neighboring gene predicted gene, 32202 Neighboring gene STARR-seq mESC enhancer starr_41367 Neighboring gene junction adhesion molecule 2 Neighboring gene STARR-positive B cell enhancer ABC_E5555 Neighboring gene predicted gene, 46557 Neighboring gene GA repeat binding protein, alpha Neighboring gene STARR-seq mESC enhancer starr_41374 Neighboring gene STARR-seq mESC enhancer starr_41375 Neighboring gene predicted gene 10791 Neighboring gene amyloid beta precursor protein Neighboring gene predicted gene, 49227

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to ATP hydrolysis activity ISO
Inferred from Sequence Orthology
more info
 
enables protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to proton-transporting ATP synthase activity, rotational mechanism ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
ATP synthase-coupling factor 6, mitochondrial
Names
ATP synthase coupling factor VI
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
ATPase subunit F6
NP_001289142.1
NP_001289143.1
NP_001289144.1
NP_001289145.1
NP_001345428.1
NP_001345429.1
NP_001403518.1
NP_001403520.1
NP_001403521.1
NP_001403522.1
NP_001403523.1
NP_001403524.1
NP_001403526.1
NP_001403527.1
NP_001403529.1
NP_001403530.1
NP_058035.1
XP_030104798.1
XP_036015646.1
XP_036015647.1
XP_036015648.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001302213.2NP_001289142.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001289142.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Related
    ENSMUSP00000109829.2, ENSMUST00000114191.8
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  2. NM_001302214.2NP_001289143.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001289143.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  3. NM_001302215.2NP_001289144.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001289144.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  4. NM_001302216.2NP_001289145.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001289145.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  5. NM_001358499.2NP_001345428.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  6. NM_001358500.2NP_001345429.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  7. NM_001416589.1NP_001403518.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  8. NM_001416591.1NP_001403520.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  9. NM_001416592.1NP_001403521.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  10. NM_001416593.1NP_001403522.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  11. NM_001416594.1NP_001403523.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  12. NM_001416595.1NP_001403524.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  13. NM_001416597.1NP_001403526.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  14. NM_001416598.2NP_001403527.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  15. NM_001416600.1NP_001403529.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  16. NM_001416601.1NP_001403530.1  ATP synthase-coupling factor 6, mitochondrial precursor

    Status: VALIDATED

    Source sequence(s)
    AC164162
    UniProtKB/Swiss-Prot
    P97450
  17. NM_016755.4NP_058035.1  ATP synthase-coupling factor 6, mitochondrial precursor

    See identical proteins and their annotated locations for NP_058035.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2, 3, 4, 5, 6 and 7 encode the same protein.
    Source sequence(s)
    AC164162
    Consensus CDS
    CCDS28283.1
    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Related
    ENSMUSP00000023608.8, ENSMUST00000023608.14
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

RNA

  1. NR_184383.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC164162
  2. NR_184384.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC164162

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    84624754..84632495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159754.1XP_036015647.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  2. XM_030248938.2XP_030104798.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  3. XM_036159755.1XP_036015648.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6
  4. XM_036159753.1XP_036015646.1  ATP synthase-coupling factor 6, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    P97450
    UniProtKB/TrEMBL
    E9QAD6
    Related
    ENSMUSP00000109831.2, ENSMUST00000114193.8
    Conserved Domains (1) summary
    pfam05511
    Location:195
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6