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Atp5f1 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 [ Mus musculus (house mouse) ]

Gene ID: 11950, updated on 7-Apr-2019

Summary

Official Symbol
Atp5f1provided by MGI
Official Full Name
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1provided by MGI
Primary source
MGI:MGI:1100495
See related
Ensembl:ENSMUSG00000000563
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Atp5pb; C76477
Expression
Ubiquitous expression in duodenum adult (RPKM 196.9), heart adult (RPKM 162.8) and 28 other tissues See more
Orthologs

Genomic context

See Atp5f1 in Genome Data Viewer
Location:
3 F2.2; 3 46.46 cM
Exon count:
10
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (105942678..105960248, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (105745781..105763166, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene transmembrane and immunoglobulin domain containing 3 Neighboring gene adenosine A3 receptor Neighboring gene RIKEN cDNA I830077J02 gene Neighboring gene WD repeat domain 77 Neighboring gene oviductal glycoprotein 1 Neighboring gene primary cilia formation

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to ATPase activity ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to proton-transporting ATP synthase activity, rotational mechanism IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
ATP synthesis coupled proton transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ion transport IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ATP synthase F(0) complex subunit B1, mitochondrial
Names
ATP synthase peripheral stalk-membrane subunit b
ATP synthase subunit b, mitochondrial
ATPase subunit b

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304719.1NP_001291648.1  ATP synthase F(0) complex subunit B1, mitochondrial isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' region and uses an alternate start codon compared to variant 1. It encodes isoform 2 which has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AK150730, BC087882, BY602471
    UniProtKB/TrEMBL
    Q5I0W0
    Conserved Domains (1) summary
    pfam05405
    Location:58219
    Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)
  2. NM_009725.4NP_033855.2  ATP synthase F(0) complex subunit B1, mitochondrial isoform 1

    See identical proteins and their annotated locations for NP_033855.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AK019459, BC087882, BY602471
    Consensus CDS
    CCDS17714.1
    UniProtKB/Swiss-Prot
    Q9CQQ7
    UniProtKB/TrEMBL
    Q5I0W0
    Related
    ENSMUSP00000113022.1, ENSMUST00000118209.7
    Conserved Domains (1) summary
    pfam05405
    Location:83244
    Mt_ATP-synt_B; Mitochondrial ATP synthase B chain precursor (ATP-synt_B)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    105942678..105960248 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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