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CLRN3 clarin 3 [ Homo sapiens (human) ]

Gene ID: 119467, updated on 13-Mar-2020

Summary

Official Symbol
CLRN3provided by HGNC
Official Full Name
clarin 3provided by HGNC
Primary source
HGNC:HGNC:20795
See related
Ensembl:ENSG00000180745
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMEM12; USH3AL1
Expression
Biased expression in small intestine (RPKM 43.6), colon (RPKM 38.2) and 5 other tissues See more
Orthologs

Genomic context

See CLRN3 in Genome Data Viewer
Location:
10q26.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (127877841..127892946, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (129676114..129691211, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene forkhead box I2 Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase pseudogene 1 Neighboring gene protein tyrosine phosphatase receptor type E Neighboring gene lncRNA antisense to PTPRE protein-coding gene Neighboring gene marker of proliferation Ki-67

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC32871, DKFZp686F11218

General protein information

Preferred Names
clarin-3
Names
transmembrane protein 12
usher syndrome type-3A-like protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_152311.5NP_689524.1  clarin-3

    See identical proteins and their annotated locations for NP_689524.1

    Status: VALIDATED

    Source sequence(s)
    AI289873, BC029478, BM830163, BX640823
    Consensus CDS
    CCDS7656.1
    UniProtKB/Swiss-Prot
    Q8NCR9
    Related
    ENSP00000357660.3, ENST00000368671.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    127877841..127892946 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011539274.2XP_011537576.1  clarin-3 isoform X1

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